Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G51300 788 / 0 splicing factor-related (.1.2.3) AT1G09660 112 / 5e-27 RNA-binding KH domain-containing protein (.1.2) AT3G08620 106 / 4e-25 RNA-binding KH domain-containing protein (.1) AT2G38610 104 / 2e-24 RNA-binding KH domain-containing protein (.1.2) AT4G26480 101 / 2e-23 RNA-binding KH domain-containing protein (.1) AT5G56140 101 / 4e-23 RNA-binding KH domain-containing protein (.1) AT3G32940 89 / 5e-18 RNA-binding KH domain-containing protein (.1) AT5G47320 73 / 3e-14 RPS19 ribosomal protein S19 (.1) AT3G23830 69 / 9e-14 AtGRP4, GR-RBP4, GRP4 glycine-rich RNA-binding protein 4 (.1.2) AT1G18630 70 / 1e-13 GR-RBP6 glycine-rich RNA-binding protein 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G107200 [exp] 979 / 0 AT5G51300 830 / 0.0 splicing factor-related (.1.2.3) Potri.004G225900 [exp] 117 / 6e-29 AT1G09660 334 / 2e-115 RNA-binding KH domain-containing protein (.1.2) Potri.003G005500 [exp] 117 / 1e-28 AT1G09660 335 / 8e-116 RNA-binding KH domain-containing protein (.1.2) Potri.016G140800 [exp] 106 / 4e-25 AT2G38610 456 / 7e-164 RNA-binding KH domain-containing protein (.1.2) Potri.011G168000 [exp] 106 / 6e-25 AT5G56140 427 / 8e-152 RNA-binding KH domain-containing protein (.1) Potri.013G159800 [exp] 105 / 9e-25 AT2G38610 408 / 7e-145 RNA-binding KH domain-containing protein (.1.2) Potri.001G471000 [exp] 103 / 7e-24 AT5G56140 425 / 9e-151 RNA-binding KH domain-containing protein (.1) Potri.003G216800 [exp] 106 / 2e-23 AT3G32940 249 / 5e-73 RNA-binding KH domain-containing protein (.1) Potri.019G132100 [exp] 100 / 6e-23 AT2G38610 381 / 3e-134 RNA-binding KH domain-containing protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038932 [exp] 819 / 0 AT5G51300 897 / 0.0 splicing factor-related (.1.2.3) Lus10037344 [exp] 119 / 3e-29 AT1G09660 400 / 1e-141 RNA-binding KH domain-containing protein (.1.2) Lus10035768 [exp] 118 / 6e-29 AT1G09660 399 / 7e-141 RNA-binding KH domain-containing protein (.1.2) Lus10035608 [exp] 105 / 1e-24 AT2G38610 494 / 6e-179 RNA-binding KH domain-containing protein (.1.2) Lus10003241 [exp] 104 / 2e-24 AT2G38610 488 / 1e-176 RNA-binding KH domain-containing protein (.1.2) Lus10019116 [exp] 102 / 8e-24 AT2G38610 275 / 7e-93 RNA-binding KH domain-containing protein (.1.2) Lus10034443 [exp] 101 / 3e-23 AT2G38610 327 / 3e-112 RNA-binding KH domain-containing protein (.1.2) Lus10039188 [exp] 104 / 1e-22 AT3G32940 255 / 2e-75 RNA-binding KH domain-containing protein (.1) Lus10021676 [exp] 97 / 1e-21 AT2G38610 314 / 1e-107 RNA-binding KH domain-containing protein (.1.2) Lus10035015 [exp] 97 / 1e-21 AT2G38610 315 / 5e-108 RNA-binding KH domain-containing protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0007 [poplar] [flax] KH PF00013 [poplar] [flax] KH_1 KH domain CL0221 [poplar] [flax] RRM PF00076 [poplar] [flax] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) CL0221 [poplar] [flax] PF16275 [poplar] [flax] SF1-HH Splicing factor 1 helix-hairpin domain
Representative CDS sequence Show only first row Show all	>Potri.001G126400.3 pacid=42789457 polypeptide=Potri.001G126400.3.p locus=Potri.001G126400 ID=Potri.001G126400.3.v4.1 annot-version=v4.1 ATGGACTCCCTCCATCAAACCCCAAACCCTCATTTCCAAACCCTACAGGACCAATCCAATCCTCCTCCTCCACCACCACCACCACCACCACCGGGGAACG TTGATTTCATCCCCGTTTACCCTAACCCCCCCCCTCCTCCTCCTCCTCCAGCTGAAGAACCCCAATTTCCTGACCCCGACAATCAAGACAAAACCCTAAT TTCAAATCCTCCTCAATTTGCCCCTGAAAATGGCCACAACCTCCAAACTACCACTCCAAAACCTGAGATCCCCAAACCTTTACTTTCCGAGAACGGTGTC GCCAACACTAACAGTGGTGATAGGGACTATTCCGGTGGAGAAGAGGAAACCACCAGTCGCCGCCGCCGCCGCAGTCGTTGGGACCCACCGGCGGATTCTG GTACTGATGGTGGTGGAGGTGGTAGTAGTAGTAATACTAATAATAATGATTCGGGTAGCGGTACGAGGAAGCGAAAATCGAGGTGGGCTGATGATGAACC GAAGCCGGTGATTCAGTTGCCTGATTTTATGAAGGACTTTACTGGAGGTATTGAATTTGATCCTGAGATTCAAGCTTTGAATGCTAGGCTATTAGAGATT AGTAGGATGTTGCAGTCTGGTTTGCCTCTTGATGATAGACCGGAAGGAGCTAGGTCTCCTTCACCGGAACCTATTTATGATAATATGGGAATTAGGATTA ATACTAGAGAGTACAGGGCAAGAGAGAGATTGAATAAAGAAAGACAAGAGATTATTTCCCAGATTATTAAGAGAAACCCAGCCTTTAAGCCGCCAGCAGA TTATAGACCCCCTAAGCTTCAAAAGAAGCTTTATATACCTATGAAAGAGTATCCAGGCTACAATTTTATTGGTTTGATTATTGGACCGAGAGGGAATACC CAGAAGAGGATGGAGAGGGAGACAGGTGCCAAGATTGTGATTCGCGGTAAAGGGTCAGTGAAGGAAGGGAGATTGCAGCAGAAGAGGGATTTGAAACCAG ATCCATCAGAGAATGAGGATTTGCATGTTTTGGTTGAGGCGGATACACAGGAGGCATTGGATGCTGCTGCAGGGATGGTTGAGAAATTGTTACAACCCGT GGATGAAGTTTTGAATGAGCATAAGAGGCAGCAGCTTAGGGAACTTGCTACTTTGAATGGAACGATTAGGGATGAGGAGTATTGTAGGTTATGTGGTGAG CCGGGCCATAGGCAGTATGCATGTCCTTCACGTACCACTACGTTTAAGAGTGACGTGCTTTGTAAGATTTGTGGTGATGGTGGACATCCAACCATTGATT GTCCTATGAAGGGAACAACTGGGAAGAAAATGGATGATGAGTATCAGAACTTTTTGGCTGAATTAGGAGGGACTATGCCAGAATCTGCAACTAAGCAAAC CGCTACCTTGGCTTTGGGGTCAAGTGGTTCTGGAAGCAATCCTCCTTGGGCTAGCAGTAATACTGGGGGTCTTGGTAGTGCCAATCAAGCAGGACTGGGG GCTAATGGGCTTAAACTTAAAGAATATGATGATACAAATTTGTATATTGGTTACTTGCCACCTAATCTTGATGACGATGGTTTGATTGGTTTGTTTTCGT CTTTCGGTGAAATTGTGATGGCCAAGGTCATTAAGGACCGGATCACTGGATTGAGTAAAGGTTATGGTTTTGTGAAATATCGTGATGTTCAAATGGCCAA TAATGCAATTGCAAGCATGAATGGTTACCGCATAGATGGTCGAACCATTGCTGTGAGAGTTGCTGGTAAGCCACCTCAGCCTACCGTCCCCCCAGGCCCC CCTGCATCAACCATGCCTGCATACCCTGTTTCAACTCAACCACTTGGTGCCTATCAATCCCAGCAGTTTACAGCAGGCGGTCCCCTTCCGAATGGTCCAC CCACCAGCTACACAGGGGCTCCTGCTAATTATACAGGAACTCCGGTTCCATGGGGATCACCAGTTCCTCCTCCTTATGCTCCTTATGCTGCTCCTCCCCC TCCGCCTCCTCCCGGGTCAACCATGTACCCTCCCATTCCTGGACAGCCTATGCCTCCATATGGTGTACAATATCCTCCACTGGTTCAGCCAGTTCCCCCA GGTGCACCAACTCAGACTGTGACGCCTAGTGAGGCTCAACAAAGCTACCCACCAGGGGTGCCATCTGAAAACAGCACATCTGCTCCGCCTGCAACATCAA ATGTGTATGGGCAGTCTGGTGCTCAACCTGCGTACACAACTTCTTTGGGTTATTCATCTTACTACAGTGCAGTGCCGCCTCCTGCTCCCCAACCAACAAC TGGCCATTCACAGGGCATGGGTAATGTGCCTTGGGCCTCAAACTTGACTGTGCCACCTCCACATTCTTCTGCAGAGAAGACAAGTTATGGTCCAGATGCA GAGTATGAGAAGTTTATGGCAGAGATGAAATGA
AA sequence Show only first row Show all	>Potri.001G126400.3 pacid=42789457 polypeptide=Potri.001G126400.3.p locus=Potri.001G126400 ID=Potri.001G126400.3.v4.1 annot-version=v4.1 MDSLHQTPNPHFQTLQDQSNPPPPPPPPPPPGNVDFIPVYPNPPPPPPPPAEEPQFPDPDNQDKTLISNPPQFAPENGHNLQTTTPKPEIPKPLLSENGV ANTNSGDRDYSGGEEETTSRRRRRSRWDPPADSGTDGGGGGSSSNTNNNDSGSGTRKRKSRWADDEPKPVIQLPDFMKDFTGGIEFDPEIQALNARLLEI SRMLQSGLPLDDRPEGARSPSPEPIYDNMGIRINTREYRARERLNKERQEIISQIIKRNPAFKPPADYRPPKLQKKLYIPMKEYPGYNFIGLIIGPRGNT QKRMERETGAKIVIRGKGSVKEGRLQQKRDLKPDPSENEDLHVLVEADTQEALDAAAGMVEKLLQPVDEVLNEHKRQQLRELATLNGTIRDEEYCRLCGE PGHRQYACPSRTTTFKSDVLCKICGDGGHPTIDCPMKGTTGKKMDDEYQNFLAELGGTMPESATKQTATLALGSSGSGSNPPWASSNTGGLGSANQAGLG ANGLKLKEYDDTNLYIGYLPPNLDDDGLIGLFSSFGEIVMAKVIKDRITGLSKGYGFVKYRDVQMANNAIASMNGYRIDGRTIAVRVAGKPPQPTVPPGP PASTMPAYPVSTQPLGAYQSQQFTAGGPLPNGPPTSYTGAPANYTGTPVPWGSPVPPPYAPYAAPPPPPPPGSTMYPPIPGQPMPPYGVQYPPLVQPVPP GAPTQTVTPSEAQQSYPPGVPSENSTSAPPATSNVYGQSGAQPAYTTSLGYSSYYSAVPPPAPQPTTGHSQGMGNVPWASNLTVPPPHSSAEKTSYGPDA EYEKFMAEMK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G51300			splicing factor-related (.1.2....		Potri.001G126400 [exp]	0	1
AT3G05380	MYB	ALY2, ATALY2	ARABIDOPSIS THALIANA ALWAYS EA...		Potri.013G020500 [exp]	1.41	0.9214
					Potri.011G162912 [exp]	3.46	0.9346
AT2G02160	C3HZnF		CCCH-type zinc finger family p...		Potri.008G144200 [exp]	6.00	0.9009
					Potri.019G025833 [exp]	7.74	0.9209
AT1G75200			flavodoxin family protein / ra...		Potri.002G260700 [exp]	8.30	0.8878
AT2G31260		ATAPG9, APG9	autophagy 9 (APG9) (.1)		Potri.002G039900 [exp]	9.53	0.8991	APG9.1
					Potri.012G114166 [exp]	9.79	0.9191
					Potri.009G040500 [exp]	10.58	0.8935
AT1G18950			DDT domain superfamily (.1)		Potri.012G072200 [exp]	11.53	0.8902
					Potri.019G025866 [exp]	11.74	0.9120

Compare expression of checked genes

Potri.001G126400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.