Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G04620 607 / 0 BIO4, ATBIOF biotin 4, biotin F (.1.2) AT3G48780 86 / 7e-18 ATSPT1 serine palmitoyltransferase 1 (.1) AT5G23670 85 / 2e-17 ATLCB2, LCB2 long chain base2 (.1.2) AT3G48790 82 / 7e-17 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G104500 [exp] 86 / 6e-18 AT5G23670 855 / 0.0 long chain base2 (.1.2) Potri.015G103800 [exp] 82 / 2e-16 AT5G23670 829 / 0.0 long chain base2 (.1.2) Potri.015G034600 [exp] 59 / 3e-09 AT4G36480 728 / 0.0 FUMONISIN B1 RESISTANT 11, EMBRYO DEFECTIVE 2779, long-chain base1 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009024 [exp] 614 / 0 AT5G04620 667 / 0.0 biotin 4, biotin F (.1.2) Lus10036011 [exp] 82 / 2e-16 AT5G23670 877 / 0.0 long chain base2 (.1.2) Lus10016717 [exp] 76 / 1e-14 AT5G23670 885 / 0.0 long chain base2 (.1.2) Lus10009662 [exp] 44 / 3e-05 AT5G04620 76 / 4e-17 biotin 4, biotin F (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0061 [poplar] [flax] PLP_aminotran PF00155 [poplar] [flax] Aminotran_1_2 Aminotransferase class I and II
Representative CDS sequence Show only first row Show all	>Potri.001G126700.1 pacid=42789868 polypeptide=Potri.001G126700.1.p locus=Potri.001G126700 ID=Potri.001G126700.1.v4.1 annot-version=v4.1 ATGGAGAATGATAGCAGTTATGGTGACTCATGGGACTCATGGGTAGACGAGGCACTTGCAAAGCTTCATTCTTTAAAACTACTTCGATCTTTAAGACCCA TTAATCTTTCCCCTCAACCTCACAAAAACTGTGAAGATGATTATCAGGTGTTCGACGAAATGCAGCCTTGGGATCGATCCTCGGTTGAAATCTCCATTTC AGAGCGCACCTTTCACAAGTGGCTCCTTGACATTCCCAGTTCAGGAGACGAGGATACATGGAGCAATGGAGTCGCTGACAATAAAGAAGCTAATGGACGG TTCAAGAAGCTACTTTTGTTCTCTGGAAATGATTACTTGGGCTTGAGTTCTCATCCCACTATTGCCAGGGCAGTTGCAAAGGCAGCACAAGAGCATGGAA TGGGGCCTAGAGGTTCTGCTTTAATCTGTGGATATACAAATTACCACAGGTTACTTGAGTCTTCCTTGGCGGACTTAAAGAAGAAAGAGGATTGTCTTCT TTGTCCTACAGGGTTCGCTGCCAATATGGCAGTGATGGTAGCTCTTGGAAACATTGTCTCTCTTTTAGCTGCAGCTGAAAAACCTATGAAGGAGGATAGG ATTGCTCTCTTTTCTGATGCACTGAACCATGCTTCGATAATTGATGGTATTCGTCTTGCTGAACGACAACATACTGTTGATGTGTATGTTTATAGGCATT GTGATATGTCCCACCTTAGTTCATTGTTATCAAGTTGTGAGTTGAAGAAGAAAGTCGTTGTGACTGATAGCTTATTTAGCATGGACGGAGACTTTGCACC AATGATTGAGCTTGTGAATTTACGCGAGAGGCATGGGTTTTTGTTAGTCATCGATGATGCTCATGGAACTTTTGTCTGTGGGAAACATGGTGGGGGAGTG GCTGAGGAGTTCAATTGTGATAGGCAAGTTGACATATGCATTGGAACTCTGAGTAAGGCTGCTGGTTGCCATGGTGGATTTATAGCATGCAGCAAAAAGT GGAAGCAACTCATACAATCAAGAGGCCGCTCATTCATATTTTCAACTTCTTCACCAGTCCCTATTGTTGCTGCTGCCCACGCTGCTGTTATTGTTGGGAA AAAGGAAGGATGGCGTAGAAAGGCAATTTGGAACAGGGTGCAAGAGTTTCGGGCTCTTACTGGAATTCCCATCACGAGTCCCATAATTTCGCTTATTGTA GGGAGTGAAGAGAAAGCCCTCAAAGCCAGCCGGCACTTGCTGAAATCTGGTTTTCACGTGACTGCAATCAGGCCCCCGACCGTGCCTCCCAACTCATGCA GGTTACGAGTGACTTTGTGCGCAACACATACAACAGATGATTTGAAGAAACTGACAGCAGCACTATCCTGTTGCATCAACTTTCAAGACATTAGTCTCTG TAACTCGAGAGGAACTGCTAGGCTCTAG
AA sequence Show only first row Show all	>Potri.001G126700.1 pacid=42789868 polypeptide=Potri.001G126700.1.p locus=Potri.001G126700 ID=Potri.001G126700.1.v4.1 annot-version=v4.1 MENDSSYGDSWDSWVDEALAKLHSLKLLRSLRPINLSPQPHKNCEDDYQVFDEMQPWDRSSVEISISERTFHKWLLDIPSSGDEDTWSNGVADNKEANGR FKKLLLFSGNDYLGLSSHPTIARAVAKAAQEHGMGPRGSALICGYTNYHRLLESSLADLKKKEDCLLCPTGFAANMAVMVALGNIVSLLAAAEKPMKEDR IALFSDALNHASIIDGIRLAERQHTVDVYVYRHCDMSHLSSLLSSCELKKKVVVTDSLFSMDGDFAPMIELVNLRERHGFLLVIDDAHGTFVCGKHGGGV AEEFNCDRQVDICIGTLSKAAGCHGGFIACSKKWKQLIQSRGRSFIFSTSSPVPIVAAAHAAVIVGKKEGWRRKAIWNRVQEFRALTGIPITSPIISLIV GSEEKALKASRHLLKSGFHVTAIRPPTVPPNSCRLRVTLCATHTTDDLKKLTAALSCCINFQDISLCNSRGTARL

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G04620		BIO4, ATBIOF	biotin 4, biotin F (.1.2)		Potri.001G126700 [exp]	0	1
AT5G42620			metalloendopeptidases;zinc ion...		Potri.014G040800 [exp]	8.48	0.7079
AT1G59750	ARF	ARF1	auxin response factor 1 (.1.2....		Potri.003G001000 [exp]	8.94	0.7388	Pt-ARF1.11
AT1G72550			tRNA synthetase beta subunit f...		Potri.013G068100 [exp]	9.16	0.7062
AT5G44280		ATRING1A	ARABIDOPSIS THALIANA RING 1A, ...		Potri.004G047000 [exp]	12.64	0.7522
AT3G59090			unknown protein		Potri.005G203600 [exp]	16.85	0.7301
AT2G21630			Sec23/Sec24 protein transport ...		Potri.014G178500 [exp]	20.49	0.7302
AT4G01210			glycosyl transferase family 1 ...		Potri.002G166100 [exp]	31.46	0.7061
AT1G27170			transmembrane receptors;ATP bi...		Potri.019G070522 [exp]	32.86	0.7111
AT1G50730			unknown protein		Potri.001G356700 [exp]	33.22	0.7148
AT2G03220		ATFUT1, ATFT1, ...	MURUS 2, ARABIDOPSIS THALIANA ...		Potri.003G191301 [exp]	34.69	0.6634

Compare expression of checked genes

Potri.001G126700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.