Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G51330 413 / 8e-134 DYAD, SWI1 SWITCH1 (.1) AT5G23610 150 / 2e-38 unknown protein AT2G01810 49 / 1e-05 RING/FYVE/PHD zinc finger superfamily protein (.1) AT1G66170 45 / 0.0002 MMD1 MALE MEIOCYTE DEATH 1, RING/FYVE/PHD zinc finger superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G106800 [exp] 1051 / 0 AT5G51330 432 / 6e-141 SWITCH1 (.1) Potri.004G137000 [exp] 180 / 3e-48 AT5G23610 276 / 1e-86 unknown protein Potri.T012300 [exp] 168 / 3e-44 AT5G23610 257 / 2e-79 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009021 [exp] 438 / 9e-143 AT5G51330 370 / 3e-119 SWITCH1 (.1) Lus10009659 [exp] 301 / 6e-90 AT5G51330 353 / 5e-112 SWITCH1 (.1) Lus10010966 [exp] 47 / 0.0001 AT1G66170 630 / 0.0 MALE MEIOCYTE DEATH 1, RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10031357 [exp] 46 / 0.0002 AT1G66170 620 / 0.0 MALE MEIOCYTE DEATH 1, RING/FYVE/PHD zinc finger superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.001G126901.1 pacid=42793133 polypeptide=Potri.001G126901.1.p locus=Potri.001G126901 ID=Potri.001G126901.1.v4.1 annot-version=v4.1 ATGAAAACGCAGGAAATGATGGGGTGCATAAACAGAAGGCAGAAACAGAATCCCGAGGACGCCGCTAAAGGGACTTTTTTAGGCGGACAATTTCTGCACC ACCCAGTAAATACCAGCACTACAACGCCGCCACCATTTGACCCAGCTGAGCACATTAAAGTAAGCTCTCTCTATGAACTTGATCACTCAAAGTTGCCTCA TAAATCCCCTGATCAACTCCACAAAATCCGGGTTGTCATGGTGAATGAAAAGACCAGAATGAGAGTTTCTCTGAGGTTTCCAAGCATCTATTCTCTAAGA TCTTACTTCAATGAGACTGAACATACTAAAAAGAAAGACTTGAGGAAGAAACTGCCAGCATTCGATGACAAGTACATGATAGGATCAGAAGTTGCAGCAG AAGCTCTTTACAGGAGAATCTCTTCACAAGAAATTGCGGACAAGAGTAGCTCATGGAGTTTCTGGGTGCTTAAAAATCCTTCGGTTTCACCTCAAAAGGT GTCAGACTCACCTAGAAGAAGTGCGAATGTTAATGTTGGTGCAAGAAAATTGTCTCTCATATCTGAGCTTAAGGGAACCGGAATGGCTAAGTGGGGTCAT GAGCGCCGGCAGGTCAGGTTCTTGGCTAAACACGTAGAGGATAAACGTGAAATTGTGGCTGTATCGAAGGACGTAGTTAAAGGCGAAGAAGAGAAACACA GTGATGGTGGCGATGATACGGAAGAAGAGGAAGAAGAGGAGGGTGATGTTAAGGTAGTAGTAAATAAATCGAGAGAAGCTAAAAGGAAATTATGTAAGAG AAAGGGTCAAGGTGGGTCTGGTGGCAAATCATCACCGAAGAAGAAAAGGACTAAAAGTGAAAAGAAGAATCAGGTTGCGGTCTATAAGCAAAAGAAGAAC AAGGTCATAAAAAAATTTATTGATAGATGGTCGGCTGAGAGGTATAAAATGGCTGAGGTTAGCATGTTGAAAGTAATGAAAGAGCAAAATGCAGTGTTTG GAAACCCAATTCTAAGGCCAGAACTGAGAGCTGAAGCACGGAAGTTGATTGGGGACACTGGATTGTTAGACCATTTGTTGAAACATATGGCGGGGAAGGT ATCTCCAGGAGGTGAAGAGAGATTTAAAAGGAGGCATAATGCAGATGGGGCAATGGAGTATTGGCTGGAGAAGGCTAATTTGGTTGATATTAGGAAAGAG GCTGGTGTGCAGGATCCTTATTGGACTCCTCCACCTGGGTGGAAACCTGGTGATAATCCTACTCAGGATCCTGTTTGTGCTAGAGAGATCAAGGAGCTCC GAAAGGAAATTGATGAAGTTAAAAGGGAGATGGTGTCCAGAAAATGTGGGAAGGAACTAGCCATTATGGCAGTACCAAATTCTTCTCCTACAAGTCAGGA CATGGAGCATGGCAGCTTAGTAATTCCAGTGGAGGAAATGTACATTGATTTGGTGAATAAGAAGGTAAAGATGGAGGAACAACTAATGGGAATTTCACAT TCTTTGTGTGGGATGGAGGAAGAAATGAAGAAGCTAAAAACCAGAGTGAAAAAATCAAACAGAACAGAATCAACAGAAAGGCCAGCATTATTAATGGGAT CGACAGAATCAACCACACCAGCTGGATCTGGAAGAAAGGGGAAAGAAGTAATGCACCAGGAAAAAGAAGCAATGGTTTTAGGGGAATTAGCACAAGAACA ATGTCAGTCATCAGGAGGCAACATACCACCAACAACAAAATCAGCAGCACCAACGGAGGACAGGGCGGCAAAGATAGAAAGGTTGAAAAGTGGGTTTAGG ATATGCAAACCCCAGGGAAGTTTCCTGTGGCCTGATATGACTACCTCAACCCCTCACCCTCAGGGTGAGGTACAACTCCAAGACCTCATTGCAGTGCACA CGCCTCCTTCTGTGTCCTCCACTTCACCAAAACAATCTTACCTTCTGTTTACTCCCCATGGACCCCGCCATACTTCCCCTGTGAAGGCATCAGCTGAGAG AAGGCCTGTCACCATTTCTCAATCCACACCTGCCACAACTCCAATTACTTTTCCTCCCCTTGATCGAATGATTCACAACCAGTATGAGAAGAGCAGCATT TCCACTTCTACTACCATCACCAACACTATCAAAACCCCTCTCATCAACCTTAATGAGCCACTGAATACCAATCAAACTGATGATTATGGGTTATTATGTT GGTCTCATTCCCATGCCCATGCTCATGCTCATGCTCAAAGCTCCCCTTACCCTGTCACTTACCAAAGAAGACATCATCAAGATTTGACTACCACTATTGC CATGCCAAGGTTGGGACCCACAAAGAAAGAGATGATGAGCCAATGGGAGGAAGGTAATCCAAGAAAAGGAATGATTAGGAACTGTGAGCAGCCGCAGCAG CAGATGGGATGCTCCGGTGCCTCATCCATTGCATCTTCTTCCATGTCAACGGAAGTAGGGACTTGGCTAGCTCTGGCTTCTTCTAAGCCTTCCGTGGAGC ACAAATCTAAAAGGGGTTAA
AA sequence Show only first row Show all	>Potri.001G126901.1 pacid=42793133 polypeptide=Potri.001G126901.1.p locus=Potri.001G126901 ID=Potri.001G126901.1.v4.1 annot-version=v4.1 MKTQEMMGCINRRQKQNPEDAAKGTFLGGQFLHHPVNTSTTTPPPFDPAEHIKVSSLYELDHSKLPHKSPDQLHKIRVVMVNEKTRMRVSLRFPSIYSLR SYFNETEHTKKKDLRKKLPAFDDKYMIGSEVAAEALYRRISSQEIADKSSSWSFWVLKNPSVSPQKVSDSPRRSANVNVGARKLSLISELKGTGMAKWGH ERRQVRFLAKHVEDKREIVAVSKDVVKGEEEKHSDGGDDTEEEEEEEGDVKVVVNKSREAKRKLCKRKGQGGSGGKSSPKKKRTKSEKKNQVAVYKQKKN KVIKKFIDRWSAERYKMAEVSMLKVMKEQNAVFGNPILRPELRAEARKLIGDTGLLDHLLKHMAGKVSPGGEERFKRRHNADGAMEYWLEKANLVDIRKE AGVQDPYWTPPPGWKPGDNPTQDPVCAREIKELRKEIDEVKREMVSRKCGKELAIMAVPNSSPTSQDMEHGSLVIPVEEMYIDLVNKKVKMEEQLMGISH SLCGMEEEMKKLKTRVKKSNRTESTERPALLMGSTESTTPAGSGRKGKEVMHQEKEAMVLGELAQEQCQSSGGNIPPTTKSAAPTEDRAAKIERLKSGFR ICKPQGSFLWPDMTTSTPHPQGEVQLQDLIAVHTPPSVSSTSPKQSYLLFTPHGPRHTSPVKASAERRPVTISQSTPATTPITFPPLDRMIHNQYEKSSI STSTTITNTIKTPLINLNEPLNTNQTDDYGLLCWSHSHAHAHAHAQSSPYPVTYQRRHHQDLTTTIAMPRLGPTKKEMMSQWEEGNPRKGMIRNCEQPQQ QMGCSGASSIASSSMSTEVGTWLALASSKPSVEHKSKRG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G51330		DYAD, SWI1	SWITCH1 (.1)		Potri.001G126901 [exp]	0	1
					Potri.001G443025 [exp]	5.19	0.7992
AT5G25190	AP2_ERF	ESE3	ethylene and salt inducible 3,...		Potri.001G048200 [exp]	7.07	0.7595
AT1G34670	MYB	ATMYB93	myb domain protein 93 (.1)		Potri.007G093900 [exp]	12.00	0.7508
AT5G50130			NAD(P)-binding Rossmann-fold s...		Potri.012G087800 [exp]	12.64	0.7275
AT1G29290			unknown protein		Potri.011G108101 [exp]	12.96	0.7405
AT2G18470		AtPERK4, PERK4	proline-rich extensin-like rec...		Potri.005G124400 [exp]	13.56	0.6967
					Potri.007G093850 [exp]	17.02	0.7486
AT2G48010		RKF3	receptor-like kinase in in flo...		Potri.013G028000 [exp]	21.49	0.7209
AT3G50950		ZAR1	HOPZ-ACTIVATED RESISTANCE 1 (....		Potri.019G125400 [exp]	22.84	0.7504
AT5G28150			Plant protein of unknown funct...		Potri.002G051600 [exp]	28.61	0.7524

Compare expression of checked genes

Potri.001G126901 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.