Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G45290 286 / 2e-89 RING/U-box superfamily protein (.1.2) AT2G27940 72 / 7e-14 RING/U-box superfamily protein (.1) AT5G66160 72 / 1e-13 JR700, ATRMR1 ARABIDOPSIS THALIANA RECEPTOR HOMOLOGY REGION TRANSMEMBRANE DOMAIN RING H2 MOTIF PROTEIN 1, receptor homology region transmembrane domain ring H2 motif protein 1 (.1.2) AT3G18930 70 / 2e-12 RING/U-box superfamily protein (.1.2) AT4G09560 70 / 2e-12 NHL22 Protease-associated (PA) RING/U-box zinc finger family protein (.1) AT2G35000 69 / 3e-12 ATL9 Arabidopsis toxicos en levadura 9, RING/U-box superfamily protein (.1) AT1G71980 69 / 3e-12 Protease-associated (PA) RING/U-box zinc finger family protein (.1) AT1G35625 66 / 3e-12 RING/U-box superfamily protein (.1) AT3G19910 68 / 4e-12 RING/U-box superfamily protein (.1) AT1G20823 65 / 6e-12 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G106600 [exp] 796 / 0 AT5G45290 320 / 4e-102 RING/U-box superfamily protein (.1.2) Potri.006G190500 [exp] 160 / 1e-42 AT5G45290 150 / 3e-39 RING/U-box superfamily protein (.1.2) Potri.014G053500 [exp] 147 / 2e-38 AT5G45290 134 / 4e-34 RING/U-box superfamily protein (.1.2) Potri.018G114700 [exp] 147 / 1e-37 AT5G45290 131 / 2e-32 RING/U-box superfamily protein (.1.2) Potri.002G140500 [exp] 140 / 7e-36 AT5G45290 119 / 1e-28 RING/U-box superfamily protein (.1.2) Potri.005G111100 [exp] 77 / 2e-15 AT5G66160 264 / 3e-88 ARABIDOPSIS THALIANA RECEPTOR HOMOLOGY REGION TRANSMEMBRANE DOMAIN RING H2 MOTIF PROTEIN 1, receptor homology region transmembrane domain ring H2 motif protein 1 (.1.2) Potri.007G086100 [exp] 70 / 6e-14 AT2G01150 71 / 3e-16 RING-H2 finger protein 2B (.1) Potri.013G073500 [exp] 71 / 3e-13 AT3G03550 262 / 2e-85 RING/U-box superfamily protein (.1) Potri.016G067900 [exp] 68 / 5e-13 AT2G35910 129 / 7e-38 RING/U-box superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035680 [exp] 489 / 3e-168 AT5G45290 343 / 1e-111 RING/U-box superfamily protein (.1.2) Lus10037267 [exp] 440 / 4e-148 AT5G45290 255 / 2e-78 RING/U-box superfamily protein (.1.2) Lus10001683 [exp] 160 / 1e-42 AT5G45290 155 / 4e-41 RING/U-box superfamily protein (.1.2) Lus10030117 [exp] 159 / 5e-42 AT5G45290 155 / 5e-41 RING/U-box superfamily protein (.1.2) Lus10043426 [exp] 71 / 1e-13 AT4G40070 84 / 5e-19 RING/U-box superfamily protein (.1) Lus10034157 [exp] 71 / 1e-13 AT4G40070 84 / 7e-19 RING/U-box superfamily protein (.1) Lus10016936 [exp] 71 / 7e-13 AT1G71980 483 / 1e-169 Protease-associated (PA) RING/U-box zinc finger family protein (.1) Lus10014823 [exp] 71 / 2e-12 AT1G71980 488 / 3e-168 Protease-associated (PA) RING/U-box zinc finger family protein (.1) Lus10041896 [exp] 69 / 2e-12 AT5G66160 283 / 3e-94 ARABIDOPSIS THALIANA RECEPTOR HOMOLOGY REGION TRANSMEMBRANE DOMAIN RING H2 MOTIF PROTEIN 1, receptor homology region transmembrane domain ring H2 motif protein 1 (.1.2) Lus10028443 [exp] 69 / 2e-12 AT5G66160 286 / 6e-96 ARABIDOPSIS THALIANA RECEPTOR HOMOLOGY REGION TRANSMEMBRANE DOMAIN RING H2 MOTIF PROTEIN 1, receptor homology region transmembrane domain ring H2 motif protein 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [poplar] [flax] RING PF13639 [poplar] [flax] zf-RING_2 Ring finger domain
Representative CDS sequence Show only first row Show all	>Potri.001G127100.2 pacid=42790373 polypeptide=Potri.001G127100.2.p locus=Potri.001G127100 ID=Potri.001G127100.2.v4.1 annot-version=v4.1 ATGGGATCCAGTGGAAGCAAGGCACATTGTGGTGGTGCCTCAGCATCATCATCAACTGGAAGTGGAAGGAAGGGAAGATCTAAAGAGAGGAGCAAGGTCT TTCAGTCTGCTTGTTTGGGTTCTTCCTGTGGATCTCGTGATAGTACAAGCGGTGACCATGTTTCTGATAATGGGAATAAAGAAAATCACGAAGGAAATGC TTCAGCTGCTAACCAGAATGAAATAGACTCGGAAGAGGTTAAAATTGAGTGTTATGGAAAGGTTAAAGTTGAGCAATCTGACGAAATGCCTTGTGTATCA TCTGATGTTGAGCTTGATGAATGGAATCAAGCAAGTATCACGAATACTTCCTCAAGAACAGGTAGCAGCTCTGCTCGAGCTGCTGCTCCTACGCAGTCGT TGACCTCTCCAAGTCGGTTTCTTTCTCGCTTTAGTTTTATTCCTGGTAATGTGAGCTTTAGGCTGAGCAGAGCAGTGAGTTTAGGGTCATCAAGGGGATA TCCCATTCATTCTACTAGTCTCAGAATGTTGGACAATGAAGACCAGATTCGCCGTCATCCACAGTCTGCCAGTGGTGCTGTTGATGGAAATGGAAATGAA ACACAACAGAGTAGTGATTTATTTGCTACATCCCTGGTTAATAGAACTGCTGCGCATTGTCGTGAACATACATCTGCTAGTTTGCAGTTGCATAGTCAAA CACCTGATCTCTTAGACAATATGCAAGAAAACCAGAATATTTTTCTCCATGCAGGAAGAGATGGCGGTGGAACTAGAGTGGGGGTTGATGGAAACTTACA TTCTCCTAGAATATTCAATGATGTGGATGGGATTGGGACAAGACTTTCTGATAGGCGAATTGGAACACGAGAACCTGCTGATCGTAATGTTCGTTTTAGC CGAACCTTGAGTGTTGGAAGGCTTCGTGATAGAGTTCTTCGTCGGTCATCACTATCTGACCTTACATTATGTCCCTTGCAACAAGAGAGAGAAATGAGAG ATTCTAGCCATGGTAGCGGGAGACAGGCATTGGGTGGGCAGATGAGGGTGTCAGAATCTGAAGGGAATGCTCTAACCTCTCCAACAGCACCTGGTTATCC TCCATCTGGCATGTCTAGCTCGCTGTTCGGCATTCGAGATAATGAGGTGGAAACCTCTCGATCAAGAGAAGCCAGGTATCACGACTTGCTAGAACATAGA TCAAATTTCCTTGAACGGAGGAGAAGAATACGATCTCAGGTTCGTGCTCTTCAGAGGTTGGGAAGCCGTTTTGAAAACCTGTCTGGACATGAGAGGTCTT GTATTTTATCTGGACAACACAGAACAGGTCGCTGCACATGCCGTGTACGAGATGCCAACTTAAATGATGAAACAAGTGCCAGGGCTAGCATATCAAGAAT TGTCATGTTGGCTGAAGCTCTATTTGAGGTTCTGGATGAAATTCACCAGCAATCAGTTGTATTGTCCTCTCGGCCTTCTATGTCCTCGCTTGGATCTGTA CCCGCACCAAATGAAATAGTGGAATCATTGCCTGTTAAATTATATGCCAAGGCCCAGAAACATCAGAATGAGGAGACAGCCCAATGTTACATATGCCTTG TGGAATATGAGGAAGGAGACAGCATGCGAGTGTTGCCTTGCCATCACGAGTTCCACAGAACATGTGTAGACAAGTGGCTTAAGGAGATTCACAGGGTATG TCCGCTTTGTCGTGGTGATATTTGTAGATCCGATTCATTGCCTACAGAGAACTAA
AA sequence Show only first row Show all	>Potri.001G127100.2 pacid=42790373 polypeptide=Potri.001G127100.2.p locus=Potri.001G127100 ID=Potri.001G127100.2.v4.1 annot-version=v4.1 MGSSGSKAHCGGASASSSTGSGRKGRSKERSKVFQSACLGSSCGSRDSTSGDHVSDNGNKENHEGNASAANQNEIDSEEVKIECYGKVKVEQSDEMPCVS SDVELDEWNQASITNTSSRTGSSSARAAAPTQSLTSPSRFLSRFSFIPGNVSFRLSRAVSLGSSRGYPIHSTSLRMLDNEDQIRRHPQSASGAVDGNGNE TQQSSDLFATSLVNRTAAHCREHTSASLQLHSQTPDLLDNMQENQNIFLHAGRDGGGTRVGVDGNLHSPRIFNDVDGIGTRLSDRRIGTREPADRNVRFS RTLSVGRLRDRVLRRSSLSDLTLCPLQQEREMRDSSHGSGRQALGGQMRVSESEGNALTSPTAPGYPPSGMSSSLFGIRDNEVETSRSREARYHDLLEHR SNFLERRRRIRSQVRALQRLGSRFENLSGHERSCILSGQHRTGRCTCRVRDANLNDETSARASISRIVMLAEALFEVLDEIHQQSVVLSSRPSMSSLGSV PAPNEIVESLPVKLYAKAQKHQNEETAQCYICLVEYEEGDSMRVLPCHHEFHRTCVDKWLKEIHRVCPLCRGDICRSDSLPTEN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G45290			RING/U-box superfamily protein...		Potri.001G127100 [exp]	0	1
AT5G26780		SHM2	serine hydroxymethyltransferas...		Potri.002G109200 [exp]	1.00	0.9476	SHMT3
AT2G40120			Protein kinase superfamily pro...		Potri.008G069000 [exp]	1.41	0.9411
AT1G06660		JASON	JASON, unknown protein		Potri.005G205700 [exp]	3.74	0.9203
AT5G54690		IRX8, GAUT12, L...	IRREGULAR XYLEM 8, galacturono...		Potri.001G416800 [exp]	4.00	0.9270
AT2G40540		ATKUP2, ATKT2, ...	potassium transporter 2 (.1.2)		Potri.013G083400 [exp]	6.63	0.9102	Pt-KT2.2
AT4G28500	NAC	ANAC073, SND2, ...	SECONDARY WALL-ASSOCIATED NAC ...		Potri.007G135300 [exp]	6.92	0.9271
AT1G01630			Sec14p-like phosphatidylinosit...		Potri.003G162100 [exp]	7.07	0.8936
AT3G01810			unknown protein		Potri.001G333200 [exp]	7.07	0.9260
AT5G18830	SBP	ATSPL7, SPL7	squamosa promoter binding prot...		Potri.008G197000 [exp]	9.59	0.8938	Pt-SPL7.2
AT1G01430		TBL25	TRICHOME BIREFRINGENCE-LIKE 25...		Potri.002G168400 [exp]	11.13	0.8916

Compare expression of checked genes

Potri.001G127100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.