Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G31650 666 / 0 ATROPGEF14, ROPGEF14 RHO guanyl-nucleotide exchange factor 14 (.1) AT5G02010 341 / 1e-110 ATROPGEF7, ROPGEF7 RHO guanyl-nucleotide exchange factor 7 (.1) AT4G38430 330 / 2e-106 ATROPGEF1, ROPGEF1 rho guanyl-nucleotide exchange factor 1 (.1) AT5G05940 328 / 7e-105 ATROPGEF5, ROPGEF5 ROP guanine nucleotide exchange factor 5 (.1) AT4G00460 318 / 1e-102 ATROPGEF3, ROPGEF3 RHO guanyl-nucleotide exchange factor 3 (.1.2) AT3G24620 315 / 5e-101 ATROPGEF8, ROPGEF8 RHO guanyl-nucleotide exchange factor 8 (.1) AT4G13240 311 / 2e-99 ATROPGEF9, ROPGEF9 RHO guanyl-nucleotide exchange factor 9 (.1) AT1G79860 310 / 4e-99 ATROPGEF12, ROPGEF12, MEE64 MATERNAL EFFECT EMBRYO ARREST 64, RHO guanyl-nucleotide exchange factor 12 (.1) AT1G01700 309 / 4e-99 ATROPGEF2, ROPGEF2 RHO guanyl-nucleotide exchange factor 2 (.1) AT3G16130 307 / 3e-97 PIRF2, ATROPGEF13, ROPGEF13 phytochrome interacting RopGEF 2, RHO guanyl-nucleotide exchange factor 13 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G106400 [exp] 943 / 0 AT1G31650 667 / 0.0 RHO guanyl-nucleotide exchange factor 14 (.1) Potri.008G062000 [exp] 352 / 8e-114 AT5G05940 664 / 0.0 ROP guanine nucleotide exchange factor 5 (.1) Potri.006G092600 [exp] 347 / 3e-112 AT5G02010 676 / 0.0 RHO guanyl-nucleotide exchange factor 7 (.1) Potri.010G196000 [exp] 343 / 1e-110 AT5G05940 659 / 0.0 ROP guanine nucleotide exchange factor 5 (.1) Potri.005G247100 [exp] 338 / 3e-109 AT4G38430 553 / 0.0 rho guanyl-nucleotide exchange factor 1 (.1) Potri.009G140100 [exp] 336 / 3e-108 AT4G38430 715 / 0.0 rho guanyl-nucleotide exchange factor 1 (.1) Potri.004G179742 [exp] 336 / 3e-108 AT4G38430 729 / 0.0 rho guanyl-nucleotide exchange factor 1 (.1) Potri.016G104400 [exp] 336 / 6e-107 AT5G02010 632 / 0.0 RHO guanyl-nucleotide exchange factor 7 (.1) Potri.002G159700 [exp] 327 / 3e-106 AT4G00460 662 / 0.0 RHO guanyl-nucleotide exchange factor 3 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033282 [exp] 718 / 0 AT1G31650 645 / 0.0 RHO guanyl-nucleotide exchange factor 14 (.1) Lus10034742 [exp] 687 / 0 AT1G31650 634 / 0.0 RHO guanyl-nucleotide exchange factor 14 (.1) Lus10035676 [exp] 643 / 0 AT1G31650 579 / 0.0 RHO guanyl-nucleotide exchange factor 14 (.1) Lus10037260 [exp] 629 / 0 AT1G31650 563 / 0.0 RHO guanyl-nucleotide exchange factor 14 (.1) Lus10009874 [exp] 344 / 2e-111 AT5G05940 643 / 0.0 ROP guanine nucleotide exchange factor 5 (.1) Lus10004676 [exp] 340 / 2e-109 AT5G05940 667 / 0.0 ROP guanine nucleotide exchange factor 5 (.1) Lus10040248 [exp] 338 / 9e-109 AT5G05940 661 / 0.0 ROP guanine nucleotide exchange factor 5 (.1) Lus10000399 [exp] 335 / 5e-108 AT5G05940 630 / 0.0 ROP guanine nucleotide exchange factor 5 (.1) Lus10021500 [exp] 328 / 5e-104 AT5G02010 664 / 0.0 RHO guanyl-nucleotide exchange factor 7 (.1) Lus10022601 [exp] 328 / 6e-104 AT5G02010 662 / 0.0 RHO guanyl-nucleotide exchange factor 7 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03759 [poplar] [flax] PRONE PRONE (Plant-specific Rop nucleotide exchanger)
Representative CDS sequence Show only first row Show all	>Potri.001G127300.2 pacid=42793724 polypeptide=Potri.001G127300.2.p locus=Potri.001G127300 ID=Potri.001G127300.2.v4.1 annot-version=v4.1 ATGATGATCTTGAGAAGAAGGCTCGCTTGCTGCACCAGGGACAGAGAGATTAGTCTCGACTTTGATAAACAAGAGAGGATAATGACATATAATGGCCTTG AGAGTTGCATTATAAACAACCAGTCTTATGAAAACGAAAGCGGGACAAGTAGAGGAGAGGGTTGCGTAAGTGACTCCTTCGATGATGATGGTTGTTCAAG CTGTTCTTCCAGCAAAGATGCTTTTGGATCATTTTCATCTAAATGGTTGACAATGAAGAAGGATGAACATGGTTTGAATGATTGGGAGCTTGCTCGAAGC CCTCAACATTTTTATGATAAAGAGAAACCGTGTTACTCCATTCAATATTCAGATGTGGAGACAATGAAAGAAAAATTTGCAAAACTGTTACTAGGTGAAG ATATCACAGGAGGGCAAAGTGGCCTCAGCACAGCATTGGCATTATCTAATGCTATAACAAATCTTGCAGCCACAGTTTTCGGGGAGCTATGGAAATTGGA GCCATTGCCTGAAGAAAGAAAGACCAAATGGCAAAGAGAAATGGACTGGTTGCTTTCTCCTACAAACTACATGGTTGAGTTAGTTCCTGCTAAGCAAAAT TGTGCCAATGGTCGGATGCTAGAGATAATGACACCAAAAGCCCGTGCAGACATCCATGTGAATCTTCCAGCACTTCAGAAGTTGGACTCTATGCTTATTG ACACACTAGATGCAATGGTGAATACTGAGTTTTGGTACTCAGAAGTAGGCAGCCGGGCAGAAGGAAGAACCAAGAGTGCAAAGCAGAGCAAGAGGTGGTG GCTCCCATTGCCACAAGTACCAACAACTGGGCTTTCTGACTCAGGAAGAAAGAAATTACTCAATCAGAGTAAGGTGGTGTATCAAGTATTCAAGGCTGCC AAATCTGTCAATGAAACTGTTTTGCTTGAAATGCCTGTGCCGACTATTATCAAGGATGCACTACCAAAGTCTGGAAAGGCAAACCTTGGTGAGGAACTGT ACAAGGTGTTGACTGCAGATTCAAACACAGCTGAGGAAATGCTCAATTCTCTTGATTTAAAATCAGAACACAGTGCTCTTGAGGCTGTTAACAAGTTAGA AGCTGCCATATTTGCATGGAAAGAGAGGGTTACTGCACAAGTCAGTGGTAGATCTCCAGTTCGAACATCATGGTCCTTTGTTAAGGACCCAGTGTCAGAG TTTGACAAGATGGAGTCACTGTTGGACAGTGCGGAATCCCTTCTACAGCTGCTAAAGAGCAGATATCCAAACCTTCCTCAAACATTTCTTGATTCTACAA AAGTCCAATATGGCAAGGACGTGGGACATGCAATCTTGGAAGCATATTCACGGGTTCTTGGAAACGTGGCATTCAGCATTCTGTCTAGGATAGCAGACGT TATGCAAGAAGATTCATTGACCAATCCCAGTTCTCCTGCGGCCACATGTTGCTTTCCAGGAATAAATTCATCAGGGTATGTGGAGACTCCAGTTCATGTG CTACATGTCCGACACTCACTCATCATCGATGAGATGAATAACGTGGATGGAAAGTATCGCGAATCCAATGCCAGTCATATTTCTGATCAGGAACTCTCAT ACAGCGAAGCCAGAACAAGCTCGGCAATTGCAACACCAAGTCGAAGTCGAGTATGGTGCATTGGTGGAGATGCTTGTAGAAGTCTGTCCCCTACAAATTC TCCATAA
AA sequence Show only first row Show all	>Potri.001G127300.2 pacid=42793724 polypeptide=Potri.001G127300.2.p locus=Potri.001G127300 ID=Potri.001G127300.2.v4.1 annot-version=v4.1 MMILRRRLACCTRDREISLDFDKQERIMTYNGLESCIINNQSYENESGTSRGEGCVSDSFDDDGCSSCSSSKDAFGSFSSKWLTMKKDEHGLNDWELARS PQHFYDKEKPCYSIQYSDVETMKEKFAKLLLGEDITGGQSGLSTALALSNAITNLAATVFGELWKLEPLPEERKTKWQREMDWLLSPTNYMVELVPAKQN CANGRMLEIMTPKARADIHVNLPALQKLDSMLIDTLDAMVNTEFWYSEVGSRAEGRTKSAKQSKRWWLPLPQVPTTGLSDSGRKKLLNQSKVVYQVFKAA KSVNETVLLEMPVPTIIKDALPKSGKANLGEELYKVLTADSNTAEEMLNSLDLKSEHSALEAVNKLEAAIFAWKERVTAQVSGRSPVRTSWSFVKDPVSE FDKMESLLDSAESLLQLLKSRYPNLPQTFLDSTKVQYGKDVGHAILEAYSRVLGNVAFSILSRIADVMQEDSLTNPSSPAATCCFPGINSSGYVETPVHV LHVRHSLIIDEMNNVDGKYRESNASHISDQELSYSEARTSSAIATPSRSRVWCIGGDACRSLSPTNSP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G31650		ATROPGEF14, ROP...	RHO guanyl-nucleotide exchange...		Potri.001G127300 [exp]	0	1
AT1G01200		ATRAB-A3, AtRAB...	ARABIDOPSIS RAB GTPASE HOMOLOG...		Potri.002G175700 [exp]	2.00	0.7242
AT5G48150	GRAS	PAT1	phytochrome a signal transduct...		Potri.014G164400 [exp]	3.00	0.6791
AT5G18590			Galactose oxidase/kelch repeat...		Potri.008G214900 [exp]	4.69	0.7348
AT3G13690			Protein kinase protein with ad...		Potri.003G034900 [exp]	12.00	0.6481
AT4G14270			unknown protein		Potri.010G182800 [exp]	13.49	0.6056
AT5G49650		XK2, XK-2	XYLULOSE KINASE 2, xylulose ki...		Potri.019G077600 [exp]	16.24	0.6442
AT3G42170			BED zinc finger ;hAT family di...		Potri.011G104000 [exp]	24.00	0.5913
AT5G18910			Protein kinase superfamily pro...		Potri.010G027301 [exp]	32.06	0.6660
AT3G14470			NB-ARC domain-containing disea...		Potri.017G144481 [exp]	32.32	0.6446
AT1G63900		DAL1	DIAP1-like protein 1, E3 Ubiqu...		Potri.014G138000 [exp]	34.77	0.5892	Pt-ZCF61.1

Compare expression of checked genes

Potri.001G127300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.