Plant FIBer expression Database

Potri.001G127900 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G27870 182 / 2e-49 Vacuolar iron transporter (VIT) family protein (.1)
AT4G27860 154 / 3e-40 vacuolar iron transporter (VIT) family protein (.1), vacuolar iron transporter (VIT) family protein (.2)
AT5G24290 128 / 2e-31 Vacuolar iron transporter (VIT) family protein (.1), Vacuolar iron transporter (VIT) family protein (.2)
AT4G27850 47 / 5e-05 Glycine-rich protein family (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.012G004000
[exp]
224 / 4e-63 AT4G27870 126 / 1e-29 Vacuolar iron transporter (VIT) family protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10022771
[exp]
269 / 2e-83 AT4G27870 155 / 4e-41 Vacuolar iron transporter (VIT) family protein (.1)
Lus10011838
[exp]
252 / 1e-75 AT4G27870 161 / 9e-42 Vacuolar iron transporter (VIT) family protein (.1)
Lus10037315
[exp]
138 / 6e-35 AT4G27870 135 / 2e-33 Vacuolar iron transporter (VIT) family protein (.1)
Lus10035731
[exp]
137 / 3e-34 AT4G27870 136 / 2e-33 Vacuolar iron transporter (VIT) family protein (.1)
PFAM info
Representative CDS sequence
>Potri.001G127900.2 pacid=42791020 polypeptide=Potri.001G127900.2.p locus=Potri.001G127900 ID=Potri.001G127900.2.v4.1 annot-version=v4.1
ATGGAGGAGTCATTTCAAGAGGATGAGGTGATGGAAGTGGCTTTGCGAGGGAGGCGTCCTCGCCAAGACAGTCAGTCATCCACCACTATATCGACAACAT
CAACTAATGGTGACACAGACGTCCATGATCCTGTCGATTCCTCCATGACTGCAAATGGATCGGCTGAATTAATCAATCAAGAGCAAAATGGAAAACAGGA
GACTTCCATTTTCGTTAACAAAGGCACTGAATCTATTGATGGGTTCCATGGATTGAAAGATGCCATTGTTGATATTGTATATTCAAAGCCTGAAAGGTTC
TTCCCGGAAGTATCAAGCCTTCCTCCTTCCAAAGTGTCGCTGGAGGAACAGATCGTACCGGTCAGTTCCACCAACCAGGGGACAACAGGACATGGAGATA
TCAGCCACATCAAAGAAGTCGCAGAACTGTATCTTGAAAGGGTTTTTGAGAAGCCTGCTGCTCATGAATTCTACTGTCCTAACTGTAAATCTTGCATCAA
GAAGGTTATAATTCGCGGTAATGAAGAGGGCAGTAGAGATGCACAACGCCCTGGGCCAGTTAAAACATTCAGATGCACATCATGCTTCAGTTTTCTCATA
CCAATAGGCAATTGGTTCTTCCCTAATTTGGTACCGAAAGGTGAAGAAGATACACTGCATCATGAGAAAGACACTGTGCAAGTTCCATCACCCGATTCAT
CAACATACAAATCTCCATCTGGTGGAACACCACCACTTGATCAAACCAAAGCTCCATCGAGTGAAACAGTACATGATGAAGATACCAACGCCTCAGTGAT
GAACCGAATTCGATCACCTGTTGCGACAACGGTAAATCAAGAACAAATTTATGGAACTACTGGTCCCCAGGAAGCTGACAGGATTAATGCAGCCTCCTCA
AAGCAAGGCTCTAAACCACTTGAAGTAATAATTGTTGGAGGAAGAAAAGTAGATGATGCAGGGCCCGAAGCAGAACCTCCTTTGAGCAGGCCAGACATTG
CTGATTCAACTGAGGGAACAACAGATTCTGAACTAAGAGGTGCTAAGAAATTGGAAATAGTGAAAAGCATTGTCTATGGCGGTTTAATTGAATCTATTAC
AAGTCTAAGTGTTGTGACATCTGCTGCTGGTGCTGAAGCTACCACATTGAACATTATATCTCTGTCGCTGGCAAACTTGATTGGTGGAATTTTCATTATT
GCTCACAGTCTTTCGGACTTGAAAAGTGAGCAACCTAGAGGGGCCTCCAGTCAAACAAATGAGCAAGTTGATCGCTATCAACAACTTCTGGGACGGAGAG
AAAATTTCTTACTTCACGCCACCATTGCTTTGTTATCATTTCTTGTTTTTGGTATAGTACCGCCTGCAGTGTATGGTTTCACATTCATGGAGACTGATGA
CAAGAATTTCAAGCTAGCAGCAGTGGCTGTAACTTCTCTTTTATGCATTACCATACTTGCTATCGGAAAGGCTTACATCCAGAATTCGCCCAAACCCTAC
TTGAAGACTGTGCTGCACTACTTTGTTACTGGAATTATGGCTTCAGGAGTTTCATACGTCGTAGGGGACCTTGCCAAAAAGTTATTTGAAAAGCTTGCCT
GGTTCGAGCCAGGAGAAGCTGTCCCTGTGCGTCTTGCTGAGATGAGTTCAGGGAGACTGGCATGGGCATCTTATTGA
AA sequence
>Potri.001G127900.2 pacid=42791020 polypeptide=Potri.001G127900.2.p locus=Potri.001G127900 ID=Potri.001G127900.2.v4.1 annot-version=v4.1
MEESFQEDEVMEVALRGRRPRQDSQSSTTISTTSTNGDTDVHDPVDSSMTANGSAELINQEQNGKQETSIFVNKGTESIDGFHGLKDAIVDIVYSKPERF
FPEVSSLPPSKVSLEEQIVPVSSTNQGTTGHGDISHIKEVAELYLERVFEKPAAHEFYCPNCKSCIKKVIIRGNEEGSRDAQRPGPVKTFRCTSCFSFLI
PIGNWFFPNLVPKGEEDTLHHEKDTVQVPSPDSSTYKSPSGGTPPLDQTKAPSSETVHDEDTNASVMNRIRSPVATTVNQEQIYGTTGPQEADRINAASS
KQGSKPLEVIIVGGRKVDDAGPEAEPPLSRPDIADSTEGTTDSELRGAKKLEIVKSIVYGGLIESITSLSVVTSAAGAEATTLNIISLSLANLIGGIFII
AHSLSDLKSEQPRGASSQTNEQVDRYQQLLGRRENFLLHATIALLSFLVFGIVPPAVYGFTFMETDDKNFKLAAVAVTSLLCITILAIGKAYIQNSPKPY
LKTVLHYFVTGIMASGVSYVVGDLAKKLFEKLAWFEPGEAVPVRLAEMSSGRLAWASY

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G27870 Vacuolar iron transporter (VIT... Potri.001G127900
[exp]
0 1
AT4G11610 NTRB, ATNTRB C2 calcium/lipid-binding plant... Potri.001G105400
[exp]
1.00 0.9490
AT2G47540 Pollen Ole e 1 allergen and ex... Potri.014G126500
[exp]
2.44 0.8853
Potri.001G388200
[exp]
2.44 0.9101
AT2G27140 HSP20-like chaperones superfam... Potri.009G153100
[exp]
4.89 0.8871
AT2G17080 Arabidopsis protein of unknown... Potri.002G012400
[exp]
5.00 0.8859
AT2G17080 Arabidopsis protein of unknown... Potri.005G248975
[exp]
5.65 0.8699
AT5G35550 MYB ATTT2, TT2, AtM... TRANSPARENT TESTA 2, MYB DOMAI... Potri.006G221500
[exp]
7.21 0.8480 MYB183
AT4G22592 CPuORF27 conserved peptide upstream ope... Potri.001G120550
[exp]
7.61 0.8023
Potri.001G388450
[exp]
7.93 0.8772
AT5G45670 GDSL-like Lipase/Acylhydrolase... Potri.012G137600
[exp]
7.93 0.8204

Potri.001G127900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.