Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G31490 607 / 0 HXXXD-type acyl-transferase family protein (.1) AT1G78990 253 / 2e-79 HXXXD-type acyl-transferase family protein (.1) AT5G16410 244 / 2e-75 HXXXD-type acyl-transferase family protein (.1) AT1G32910 236 / 2e-72 HXXXD-type acyl-transferase family protein (.1) AT5G41040 119 / 2e-29 HXXXD-type acyl-transferase family protein (.1.2) AT5G63560 107 / 4e-25 HXXXD-type acyl-transferase family protein (.1) AT5G57840 105 / 2e-24 HXXXD-type acyl-transferase family protein (.1) AT1G27620 105 / 2e-24 HXXXD-type acyl-transferase family protein (.1) AT3G26040 105 / 2e-24 HXXXD-type acyl-transferase family protein (.1) AT1G03390 102 / 2e-23 HXXXD-type acyl-transferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G003800 [exp] 263 / 8e-83 AT1G32910 533 / 0.0 HXXXD-type acyl-transferase family protein (.1) Potri.018G104700 [exp] 117 / 1e-28 AT5G48930 489 / 5e-172 hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) Potri.006G157100 [exp] 116 / 3e-28 AT1G03390 627 / 0.0 HXXXD-type acyl-transferase family protein (.1) Potri.006G158400 [exp] 116 / 3e-28 AT1G03390 625 / 0.0 HXXXD-type acyl-transferase family protein (.1) Potri.018G105500 [exp] 115 / 7e-28 AT5G48930 556 / 0.0 hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) Potri.003G183900 [exp] 114 / 1e-27 AT5G48930 758 / 0.0 hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) Potri.001G042900 [exp] 111 / 1e-26 AT5G48930 749 / 0.0 hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) Potri.005G028100 [exp] 110 / 3e-26 AT5G48930 509 / 5e-180 hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) Potri.001G326300 [exp] 110 / 3e-26 AT5G41040 677 / 0.0 HXXXD-type acyl-transferase family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023806 [exp] 556 / 0 AT1G31490 511 / 3e-180 HXXXD-type acyl-transferase family protein (.1) Lus10033327 [exp] 232 / 3e-71 AT1G32910 485 / 8e-170 HXXXD-type acyl-transferase family protein (.1) Lus10006333 [exp] 181 / 5e-52 AT1G32910 428 / 5e-148 HXXXD-type acyl-transferase family protein (.1) Lus10034786 [exp] 155 / 6e-43 AT1G32910 334 / 7e-112 HXXXD-type acyl-transferase family protein (.1) Lus10035190 [exp] 130 / 5e-33 AT5G41040 419 / 5e-144 HXXXD-type acyl-transferase family protein (.1.2) Lus10010786 [exp] 128 / 2e-32 AT5G48930 451 / 5e-157 hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) Lus10022163 [exp] 127 / 5e-32 AT5G48930 449 / 2e-156 hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) Lus10032554 [exp] 122 / 3e-30 AT5G41040 640 / 0.0 HXXXD-type acyl-transferase family protein (.1.2) Lus10017744 [exp] 119 / 6e-29 AT1G03390 643 / 0.0 HXXXD-type acyl-transferase family protein (.1) Lus10043189 [exp] 118 / 6e-29 AT5G41040 635 / 0.0 HXXXD-type acyl-transferase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0149 [poplar] [flax] CoA-acyltrans PF02458 [poplar] [flax] Transferase Transferase family
Representative CDS sequence Show only first row Show all	>Potri.001G128100.1 pacid=42792100 polypeptide=Potri.001G128100.1.p locus=Potri.001G128100 ID=Potri.001G128100.1.v4.1 annot-version=v4.1 ATGGAAGAAGTTCCGGAGCATGGAAAGTTTGCGGTGATCTTCACAGAAAAAAGTGTTGTCAAAGCCGCGAATCCCTTGCCAAAGCCACAAAGACTCACTC TATCAAATCTTGACCTACTTTCTGGCCGATTTCCTGTCACATACTTCTATTTCTACCATAATCCTGAAAAGGTTTGTTTTTCCTCCATCATGGAGTCCCT AAAGAGTTCCCTCGCTGAGACTCTTAGTTACTACTACCCATTTGCTGGTCAAATAGTACAAAATCCAAATACTAATGAGCCTGAGATTATATGTGACGAT AATGGTGCTTTGGTTGTAGAAGGTCATGCCAACATTTCTTTGAAGAAACTAGACTTCTACAACCTTGATCAATTTTTGCAAGGGAAACTCGTTTCTCTCA ACACTGAGTTTCCTTTACAAGTTCAAGTCACCCGTTACACATGTGGAGGCATCTCAATAACATTCACCTTTGATCATGCACTCGGCGATGCAAGTGCCTT TGGTAAATTCTTGGTTTCATGGTCAGAAATCGCTCAAAGAAAGCCAATATCTTGCATGCCAGATCACAGGAGAAACCTTCTAGCACGCTGTCCTCCAACT TGTCATCCTTCTTTGGATCAAACTTTCGTAAAGTGCACCATAGAAGAAATAATAAACATGCCCACAACCCAGATCTTGCTCAAGCGCCTATATCATATTG ATGTCTCCAGCATCAATAGGCTGCAGCAACTTGCTTGTGCCAGCGGTAATAAGAGAACTAAAATTGAGGCCTTCTCAGCCTATGTATGGAAGATAATGGT TACAGCCATTGATGAAAGGCATCAAAAGTGCAAGATGGGATGGTTAGTCGATGGACGTGGTAGAGTTCATGGAGCTCAGAATTTAATGTCAAATTACATA GGGAATGTATTATCCGTTGCTGTTGCAGAAGCAACCATTGCAGAACTGAAGCAGGGGTCTATATCAGATATTGCTAGCAATGTTCATGATTCCATATCAA AGGTGACTAATGAGGCACATTTCTTGGATTTGATAGATTGGATCGAGTGTCATAGACCTGGTCTGATGCTATCTAGCATTGTATTAGGCCGAGGAGGTCC GGCCCTTGTTTTGTCATCAGGGAGGAGGTTTCCAGTTGCTGAATTGGACTTCGGATTCGGTGGTCCAGTGTTGGGCACGGTTTGTACAACGGTAGAAAAA ATTGGAGTTGGCTACATGAACCAAAGGCCAAGCGCTAGAAACGACGGCTCATGGACTGTTTCAGCTATCCTGTGGCCAGAACTAGCTGCTGCCTTGGAGT CGGACTCGATTTTTCAACCTATGTCAGCTAGTCTTCTTCGACTATGA
AA sequence Show only first row Show all	>Potri.001G128100.1 pacid=42792100 polypeptide=Potri.001G128100.1.p locus=Potri.001G128100 ID=Potri.001G128100.1.v4.1 annot-version=v4.1 MEEVPEHGKFAVIFTEKSVVKAANPLPKPQRLTLSNLDLLSGRFPVTYFYFYHNPEKVCFSSIMESLKSSLAETLSYYYPFAGQIVQNPNTNEPEIICDD NGALVVEGHANISLKKLDFYNLDQFLQGKLVSLNTEFPLQVQVTRYTCGGISITFTFDHALGDASAFGKFLVSWSEIAQRKPISCMPDHRRNLLARCPPT CHPSLDQTFVKCTIEEIINMPTTQILLKRLYHIDVSSINRLQQLACASGNKRTKIEAFSAYVWKIMVTAIDERHQKCKMGWLVDGRGRVHGAQNLMSNYI GNVLSVAVAEATIAELKQGSISDIASNVHDSISKVTNEAHFLDLIDWIECHRPGLMLSSIVLGRGGPALVLSSGRRFPVAELDFGFGGPVLGTVCTTVEK IGVGYMNQRPSARNDGSWTVSAILWPELAAALESDSIFQPMSASLLRL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G31490			HXXXD-type acyl-transferase fa...		Potri.001G128100 [exp]	0	1
AT3G50950		ZAR1	HOPZ-ACTIVATED RESISTANCE 1 (....		Potri.011G129800 [exp]	2.82	0.8971
AT2G16990			Major facilitator superfamily ...		Potri.009G138900 [exp]	2.82	0.8596
					Potri.010G147200 [exp]	5.47	0.8942
					Potri.002G200150 [exp]	6.00	0.8501
					Potri.006G283900 [exp]	6.78	0.8286
AT2G40160		TBL30	Plant protein of unknown funct...		Potri.008G070101 [exp]	7.34	0.8262
AT2G40030		NRPE1, DMS5, AT...	DEFECTIVE IN MERISTEM SILENCIN...		Potri.001G027232 [exp]	7.34	0.8706
AT1G78380		GST8, ATGSTU19	GLUTATHIONE TRANSFERASE 8, A. ...		Potri.001G437400 [exp]	9.69	0.7601
AT3G54450			Major facilitator superfamily ...		Potri.001G027100 [exp]	9.89	0.8648
AT4G12300		CYP706A4	"cytochrome P450, family 706, ...		Potri.005G045800 [exp]	10.00	0.8334

Compare expression of checked genes

Potri.001G128100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.