Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G19450 775 / 0 Major facilitator superfamily protein (.1) AT5G45275 758 / 0 Major facilitator superfamily protein (.1) AT1G31470 578 / 0 NFD4 NUCLEAR FUSION DEFECTIVE 4, Major facilitator superfamily protein (.1) AT3G01630 540 / 0 Major facilitator superfamily protein (.1) AT4G34950 214 / 8e-62 Major facilitator superfamily protein (.1) AT2G16660 189 / 1e-52 Major facilitator superfamily protein (.1) AT5G50520 150 / 1e-38 Major facilitator superfamily protein (.1) AT5G50630 150 / 1e-38 Major facilitator superfamily protein (.1) AT2G30300 145 / 2e-37 Major facilitator superfamily protein (.1) AT2G28120 132 / 2e-32 Major facilitator superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G105600 [exp] 937 / 0 AT4G19450 734 / 0.0 Major facilitator superfamily protein (.1) Potri.019G126700 [exp] 278 / 7e-86 AT2G30300 427 / 4e-145 Major facilitator superfamily protein (.1) Potri.013G084000 [exp] 223 / 5e-65 AT2G30300 241 / 2e-73 Major facilitator superfamily protein (.1) Potri.004G173400 [exp] 221 / 4e-64 AT4G34950 682 / 0.0 Major facilitator superfamily protein (.1) Potri.009G132700 [exp] 215 / 5e-62 AT4G34950 661 / 0.0 Major facilitator superfamily protein (.1) Potri.005G112400 [exp] 194 / 1e-54 AT4G34950 618 / 0.0 Major facilitator superfamily protein (.1) Potri.003G012300 [exp] 185 / 4e-51 AT1G80530 650 / 0.0 Major facilitator superfamily protein (.1) Potri.006G060900 [exp] 184 / 1e-50 AT1G80530 632 / 0.0 Major facilitator superfamily protein (.1) Potri.001G204700 [exp] 177 / 4e-48 AT1G80530 625 / 0.0 Major facilitator superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034738 [exp] 727 / 0 AT4G19450 691 / 0.0 Major facilitator superfamily protein (.1) Lus10033271 [exp] 523 / 0 AT4G19450 516 / 0.0 Major facilitator superfamily protein (.1) Lus10026422 [exp] 283 / 1e-87 AT2G30300 379 / 5e-126 Major facilitator superfamily protein (.1) Lus10015469 [exp] 273 / 5e-84 AT2G30300 396 / 5e-133 Major facilitator superfamily protein (.1) Lus10034491 [exp] 209 / 1e-59 AT4G34950 788 / 0.0 Major facilitator superfamily protein (.1) Lus10025053 [exp] 201 / 1e-56 AT4G34950 793 / 0.0 Major facilitator superfamily protein (.1) Lus10033270 [exp] 172 / 9e-51 AT5G45275 178 / 4e-54 Major facilitator superfamily protein (.1) Lus10028803 [exp] 174 / 7e-47 AT1G80530 707 / 0.0 Major facilitator superfamily protein (.1) Lus10015470 [exp] 157 / 4e-41 AT2G30300 351 / 2e-115 Major facilitator superfamily protein (.1) Lus10019941 [exp] 124 / 6e-30 AT2G30300 307 / 1e-98 Major facilitator superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [poplar] [flax] MFS PF06813 [poplar] [flax] Nodulin-like Nodulin-like
Representative CDS sequence Show only first row Show all	>Potri.001G128200.1 pacid=42791133 polypeptide=Potri.001G128200.1.p locus=Potri.001G128200 ID=Potri.001G128200.1.v4.1 annot-version=v4.1 ATGCGGCCACGTAGAGGTACTGAGAGACGCGATTTCTCCAACAATTTAGAACATTCGACGACAAGGCCATCAGGCTCCAACCGCCGCCGCAACTTGTTAT CTCCGGCGTCTTTATTTGGAGCTATATTAATAGCAAAGAGAGTGTCCATGGCAGGACAGTCAAGGAAGTGGATGATATTGGTGGCAACTGTATGGATTCA AGCATTTACAGGGACAAATTTCGATTTCTCTGCTTATTCATCGGATTTAAAATCCGTTCTCGGGATCTCTCAGGTGCAATTGAATTACTTGGCTGTTGCC TCTGATCTTGGAAAGGTTTTTGGATGGTCTTCAGGGTTGGCTCTCTTGTATTTTCCATTATGGGTGGTTCTTTTCATGGCTGCTTTCATGGGGTTGTTTG GTTACGGTCTTCAATGGCTTGTTATGAGGGACATCATCTCCTTGCCGTATATCCTGGTGTTTCTTCTTTGTTTGCTGGCTGGATGTAGTATTTGTTGGTT CAACACTGTATGTTTTGTTCTTTGCATCCAAAATTTCCCAGCTAACCGGCCCCTAGCTTTATCTCTCACGATAGCCTTCAATGGTGTGAGTGCAGCCCTA TACACTCTCGCTGGCAATGCAATAGATTCATCATCAAACGATATATATCTTCTTTTAAATGCTTTTATTCCCCTCATCACTTCCGTTGTATCACTGATCC CCATTATTCGTCAACCATCTTTAGACCCCCTTCCTCCCGATGGAGTCCGCCGTGATTCCCTTATATTTCTAATATTGAATTTCTTAGCCATCCTCACAGG AATTTATCTTCTTCTCTTTGGTTCAAGTTCATCTGATGGAACGAGAGCTCGTCTACTCCTTGGGGGAGCAATTTTTCTACTAATTTTCCCATTATGTATC CCTGGTATTGTCTATGCTAGAGAATGGTTTCACCGGACCATCCATTCTAGTTTCAGCATTCATGGCTCTGGCTTCATTCTTGTGGATGTTGATGATCTTG AGCTTCACAAAGAGCTCATTACCCGTGAGTCGAGTTATCATGAAAATGGAGATGAAACTATGTATGAAATTAAAAGGAGGAAAAGCAGTGGTGAAAAAGA AGGGTGCTGTGATTCAATCGTTAAGAAAGATCGATTAGCAATGCTTGGGGAAGAGCACCCTGTGTCGTTGCTGGTAAGCAGGTTGGATTTTTGGCTATAC TACACTGCATATGTCTGTGGGGGTACCATTGGCCTCGTGTACAGCAACAATTTAGGTCAAATAGCACAATCACTTGGACAAAGTTCAAACACTACAACTC TTGTAACTCTCTATTCATCCTTCTCCTTTTTTGGCCGCTTGCTTTCAGCAGCACCAGACTACATACGAGCGAAGATGTACTTTGCAAGGACTGCGTGGCT AACCATTGCCCTTGTGCCAACCCCAATAGCCTTCTTCTTGCTCGCTGCATCAGGCAATGCAGTAGCATTGCATATAAGCACTGCATTAGTTGGATTGAGC TCTGGGTTCATCTTTGCCGCAGCAGTTTCAATAACTTCTGAGCTATTTGGGCCAAATAGTGTAGGTGTCAATCACAACATTCTTATCACCAATATCCCAA TAGGATCACTTGTTTATGGTTTTCTAGCAGCTATAGTGTATGATTCTCATGTAAGCTCTAGCCTAAACATCATCACTGACTCGGTGGTGTGCATGGGAAG GCAGTGCTATTTCTTAACGTTTGTGTGGTGGGGATGCTTATCGGTGTTGGGCTTAACTTCTAGCTTGTTGTTATTCTTGAGAACCAGACATGCCTATGAC CAGTTTGAAGCAAAACGTATTTCGAGCATGACACCGCTGTATTAA
AA sequence Show only first row Show all	>Potri.001G128200.1 pacid=42791133 polypeptide=Potri.001G128200.1.p locus=Potri.001G128200 ID=Potri.001G128200.1.v4.1 annot-version=v4.1 MRPRRGTERRDFSNNLEHSTTRPSGSNRRRNLLSPASLFGAILIAKRVSMAGQSRKWMILVATVWIQAFTGTNFDFSAYSSDLKSVLGISQVQLNYLAVA SDLGKVFGWSSGLALLYFPLWVVLFMAAFMGLFGYGLQWLVMRDIISLPYILVFLLCLLAGCSICWFNTVCFVLCIQNFPANRPLALSLTIAFNGVSAAL YTLAGNAIDSSSNDIYLLLNAFIPLITSVVSLIPIIRQPSLDPLPPDGVRRDSLIFLILNFLAILTGIYLLLFGSSSSDGTRARLLLGGAIFLLIFPLCI PGIVYAREWFHRTIHSSFSIHGSGFILVDVDDLELHKELITRESSYHENGDETMYEIKRRKSSGEKEGCCDSIVKKDRLAMLGEEHPVSLLVSRLDFWLY YTAYVCGGTIGLVYSNNLGQIAQSLGQSSNTTTLVTLYSSFSFFGRLLSAAPDYIRAKMYFARTAWLTIALVPTPIAFFLLAASGNAVALHISTALVGLS SGFIFAAAVSITSELFGPNSVGVNHNILITNIPIGSLVYGFLAAIVYDSHVSSSLNIITDSVVCMGRQCYFLTFVWWGCLSVLGLTSSLLLFLRTRHAYD QFEAKRISSMTPLY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G19450			Major facilitator superfamily ...		Potri.001G128200 [exp]	0	1
AT4G16510			YbaK/aminoacyl-tRNA synthetase...		Potri.003G111100 [exp]	2.44	0.7527
AT5G23570		SGS3, ATSGS3	SUPPRESSOR OF GENE SILENCING 3...		Potri.003G021000 [exp]	3.46	0.7465
AT5G42090			Lung seven transmembrane recep...		Potri.001G083100 [exp]	3.60	0.7574
AT4G16510			YbaK/aminoacyl-tRNA synthetase...		Potri.008G135980 [exp]	4.89	0.6868
AT5G16760		AtITPK1	inositol \(1,3,4\) P3 5/6-kina...		Potri.001G140000 [exp]	10.19	0.6631
AT2G43060	bHLH	AtIBH1, bHLH158	ILI1 binding bHLH 1 (.1)		Potri.002G232500 [exp]	11.00	0.6692
AT3G10940		LSF2	LIKE SEX4 2, dual specificity ...		Potri.019G048600 [exp]	15.19	0.6852
AT4G18700		ATWL4, CIPK12, ...	SNF1-RELATED PROTEIN KINASE 3....		Potri.011G067600 [exp]	15.49	0.6567
AT2G30942			Protein of unknown function (D...		Potri.002G263300 [exp]	17.08	0.7332
AT4G14240			CBS domain-containing protein ...		Potri.010G030200 [exp]	18.02	0.6370

Compare expression of checked genes

Potri.001G128200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.