Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G45616 498 / 1e-159 AtRLP6 receptor like protein 6 (.1) AT1G47890 473 / 1e-149 AtRLP7 receptor like protein 7 (.1) AT2G15080 463 / 2e-146 AtRLP19 receptor like protein 19 (.1.2) AT3G05660 433 / 3e-136 AtRLP33 receptor like protein 33 (.1) AT3G11010 432 / 5e-136 AtRLP34 receptor like protein 34 (.1) AT3G11080 429 / 6e-134 AtRLP35 receptor like protein 35 (.1) AT5G27060 422 / 1e-131 AtRLP53 receptor like protein 53 (.1) AT2G33020 410 / 7e-128 AtRLP24 receptor like protein 24 (.1) AT3G05650 407 / 9e-127 AtRLP32 receptor like protein 32 (.1) AT5G40170 400 / 5e-125 AtRLP54 receptor like protein 54 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G120600 [exp] 773 / 0 AT1G47890 441 / 7e-137 receptor like protein 7 (.1) Potri.001G437700 [exp] 665 / 0 AT1G47890 397 / 4e-122 receptor like protein 7 (.1) Potri.016G126900 [exp] 588 / 0 AT1G45616 510 / 5e-165 receptor like protein 6 (.1) Potri.016G127101 [exp] 582 / 0 AT1G47890 580 / 0.0 receptor like protein 7 (.1) Potri.016G127000 [exp] 571 / 0 AT1G47890 588 / 0.0 receptor like protein 7 (.1) Potri.016G120532 [exp] 544 / 1e-179 AT1G45616 325 / 9e-98 receptor like protein 6 (.1) Potri.001G389100 [exp] 519 / 1e-167 AT5G27060 468 / 1e-149 receptor like protein 53 (.1) Potri.012G027600 [exp] 499 / 1e-158 AT1G71400 395 / 1e-121 receptor like protein 12 (.1) Potri.011G021400 [exp] 482 / 2e-153 AT3G11080 375 / 2e-114 receptor like protein 35 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003389 [exp] 689 / 0 AT1G45616 432 / 7e-135 receptor like protein 6 (.1) Lus10026415 [exp] 671 / 0 AT1G47890 424 / 3e-131 receptor like protein 7 (.1) Lus10042239 [exp] 669 / 0 AT1G45616 395 / 1e-121 receptor like protein 6 (.1) Lus10006825 [exp] 529 / 1e-170 AT1G47890 377 / 6e-114 receptor like protein 7 (.1) Lus10011064 [exp] 489 / 6e-156 AT1G45616 366 / 2e-111 receptor like protein 6 (.1) Lus10003387 [exp] 489 / 3e-155 AT1G47890 394 / 3e-120 receptor like protein 7 (.1) Lus10016402 [exp] 443 / 2e-142 AT1G47890 313 / 4e-94 receptor like protein 7 (.1) Lus10004313 [exp] 432 / 4e-137 AT2G33060 335 / 5e-103 receptor like protein 27 (.1) Lus10011039 [exp] 442 / 4e-133 AT3G11010 367 / 5e-110 receptor like protein 34 (.1) Lus10004310 [exp] 412 / 6e-129 AT2G33060 358 / 6e-111 receptor like protein 27 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [poplar] [flax] LRR PF00560 [poplar] [flax] LRR_1 Leucine Rich Repeat CL0022 [poplar] [flax] PF08263 [poplar] [flax] LRRNT_2 Leucine rich repeat N-terminal domain CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.001G128400.1 pacid=42790938 polypeptide=Potri.001G128400.1.p locus=Potri.001G128400 ID=Potri.001G128400.1.v4.1 annot-version=v4.1 ATGGGCAATTCGCTTATGCACACCTGCTTATATTGCCTGCTAAAACTCTTTGTTGGAATTTGCTTCCTTTCTTCCATTGTTTCTAGCCAATGTCTTGAGC ACCAGAGGTCAGTACTACTACAAATCAAACAAGAATTGTCAATTGATCCTCATTTTGTAACTGACTCGAAGCTTCTGTCTTGGACACCAACAAAAAACTG CTGCTTGTGGGATGGTGTGACTTGTGACCTTCAAACTGGTTATGTTGTCGGTCTAGACCTCAGCAATAGCTCCATTACTAGTGGAATCAACGGCTCTACC AGTATCTTCAGTCTTCATCACCTCCAGTATCTCAGCATAGCGGGAAATGAATTGTATTCCTCTCCCTTTCCATCAGGATTTAGTAGACTTTCGAGCTTGA CTCATCTCAACTTTTCATGGTCAGGCTTTTTTGGCCAAGTTCCAGCTGAAATTTCATTTCTTAGAAAGTTGGTATCTCTTGATCTTTCTTTTTATCCGTT TGGATCAGAGGAACCTGTAACACTCCAAAATCCAGATATTGAAACACTTGTCGAAAACCTTACTAGGCTGAGGGTGCTCCACCTTGATGGAATAGACCTC TCCATGGCTGAGAGTAAGTTGTGGGCGGTCCTGTCAACAAAACTTCCTAACCTTCGTGTCTTGGGTTTGTCAAATTGTAATCTTGCTGGGGTATTGCACC CTTCTCTTTTACAACTTGAGAAACTCACTGATCTCCAGCTAAGTGGAAACAACTTTTCATCAAGAGTGCCTGACTTCTTAGCCAAGTTTTCTTCTTTGAA AACTTTGCATCTAAGCTGTTGTGGGTTGTATGGAATTTTTCCAAATAGTCTGTTCTTGATGCGCACTCTGCGTTCTCTTGATGTGTCCTACAATTCTAAT CTCACTGGAACTTTGCCAGCAGAGTTCCCTTCAGGCAGCAGACTTGAAGTTATTAACCTCTCAGGAACAATGTTTATGGGGAATTTACCACATTCGATAG TTAATCTTGTCTTCCTACAAGATTTAGAAATTTCTCAATGCAGTTTTTCCGGATCAATTCCTTCCTCATTTGAGAATCTCACCGAGCTTCGTTATCTTGA TTTTGGAAGAAATAATTTCAGTGGTCCAGTTCCATCTCTGGCTTTATCAGAAAAGATCACTGGATTGATATTTTTCGACAATCATTTCTCAGGATTTATT CCTTTGTCTTATGCGAATGGGCTGACCTATCTCGAAGTTCTCGACCTGAGGAACAACTCATTGAAGGGAATGATCCCTCCAGCTCTTTTCACGAAACCCT TATTGTGGAGGCTAGATCTTAGCCAGAACCAGCTTAATGGACAGCTAAAAGAATTTCAGAATGCTTCATCTTCCCTATTGAGGGTGATGCACCTGAGTGA AAATGAATTGCAGGGTCCAATACCAGTGTCAATCTTCAAAATAAGAGGACTCAATGTCCTGGGGCTTTCTTCCAACCAGTTCAATGGCACCATAAACTTT GAGATGATCAAAGATACTAACGAGCTTACTACACTCGATCTCTCTGGCAATAACTTCTCCTTTGAGGTTAGTGGTGTCAATTCAACCTTGTTTTCTCATA TTGGAAAGCTCGGTTTGGGTTCCTGTAATTTAAAAGAAATTCCAGGTTTTCTGACAAACCTGATGAACTTGTTTTATTTGGACCTTTCTAATAACAAAAT CAAGGGTGAAATACCTAAATGGATTTGGAAATTAGGCAACGAGAATCTGGTATATCTAAACCTATCTAACAATATGCTATCTGGTTTTGACAAACCAATT CCAAATCTTTCTCCTGGTAACTTGGTTGTTCTCGATCTTCATTCCAATTTGCTGCAGGGGCCCTTCCTTATGCCATCACCTTCCATCATCCACTTAGATT ACTCACACAACCAGTTTTCATCCTCCTTACCATCCAGGATTTTCGAAAACCTGACCTATGCTAGTTTCGTATCCCTATCAAGTAATCACTTCAATGGAGA AATTCCGTTTTCAATGTGCGAGTCGTGGAACTTATTTGTCCTAGATCTGTCTAAAAATCACTTCAATGGCTCCATTCCAGAGTGCCTGGGTAATTCCAAT AGTTTCTTGAAGGTGTTAAATCTGCGAAACAATGAACTACATGGAATCCTGCCAAAAAGATTCGCAGAGAATTGCACTTTGAGAACTCTCGATGTCAATC AAAATCACTTAGAAGGGCCTCTGCCAAGATCACTGGCCAACTGTGGAGATTTGGAAGTTTTAGACGTTGGCAACAATTTCTTGAATGGTTCTTTCCCATT CTGGTTGGAAACTTTGCCCCTGCTACGAGTCCTTATCTTGCGGTCCAATTTCTTCGGCGGTTCAATCATTTATTCTCCCAGTAAAACTTCATTCCCTCTG CTACAAATAATTGATCTAGCTTCCAATAAATTCCGGGGCAATTTGTCGTCTGAATGGTTCAAGAGTTGGAAGGGGATGATGAAGCAGGAAAAGAAATCAC AGTCTAGCCAAGTTCTCAGATATAGTTATTTGGTGCTAACTCCATTCTATTACAAAGACTCTGTGACATTGGTAAACAAAGGGTTTAACATGGAGTTGGA GAAGATCTTGACAATCTTCACTTCTATTGATTTATCCAACAATCTGTTCGAGGGTGAGATTCCTGAAAAAATAGGAGATCTTGATTTACTCTATGTACTC AACTTGTCAAATAACCATCTCACAGGCCAGATTCCTTCTTCATTTGGAAAACTCAAGGAGCTTGGTTCTTTGGACCTGTCAGAAAACAGACTTTCAGGTA CGATTCCTCAACAACTCACCACATTAACCTTTCTCTCAGTTTTAAAACTCTCACAGAATCTCCTCGTGGGAGAGATACCGCAAGGCAATCAGTTTGGGAC ATTCACATCAGCTGCTTTTGAAGGGAATATTGGACTATGTGGCCCTCCATTAACCAAGACCTGCTCTCATGCACTGCCTCCAATGGAGCCGAATGCCGAC CGTGGAAATGGCACTTGGGGTATTGATTGGAACTACTATTGGATTGGATTTGGCTGTGGAGGTGGAATGGGCCTAAATATTGGGTTTGTGGCAGGAACTG TTGCCATTAATATCTTTGTGATGGGAAGGGGAAGAGGAGGAAGAAGAAGATTTTATACATATATACATCAGTAG
AA sequence Show only first row Show all	>Potri.001G128400.1 pacid=42790938 polypeptide=Potri.001G128400.1.p locus=Potri.001G128400 ID=Potri.001G128400.1.v4.1 annot-version=v4.1 MGNSLMHTCLYCLLKLFVGICFLSSIVSSQCLEHQRSVLLQIKQELSIDPHFVTDSKLLSWTPTKNCCLWDGVTCDLQTGYVVGLDLSNSSITSGINGST SIFSLHHLQYLSIAGNELYSSPFPSGFSRLSSLTHLNFSWSGFFGQVPAEISFLRKLVSLDLSFYPFGSEEPVTLQNPDIETLVENLTRLRVLHLDGIDL SMAESKLWAVLSTKLPNLRVLGLSNCNLAGVLHPSLLQLEKLTDLQLSGNNFSSRVPDFLAKFSSLKTLHLSCCGLYGIFPNSLFLMRTLRSLDVSYNSN LTGTLPAEFPSGSRLEVINLSGTMFMGNLPHSIVNLVFLQDLEISQCSFSGSIPSSFENLTELRYLDFGRNNFSGPVPSLALSEKITGLIFFDNHFSGFI PLSYANGLTYLEVLDLRNNSLKGMIPPALFTKPLLWRLDLSQNQLNGQLKEFQNASSSLLRVMHLSENELQGPIPVSIFKIRGLNVLGLSSNQFNGTINF EMIKDTNELTTLDLSGNNFSFEVSGVNSTLFSHIGKLGLGSCNLKEIPGFLTNLMNLFYLDLSNNKIKGEIPKWIWKLGNENLVYLNLSNNMLSGFDKPI PNLSPGNLVVLDLHSNLLQGPFLMPSPSIIHLDYSHNQFSSSLPSRIFENLTYASFVSLSSNHFNGEIPFSMCESWNLFVLDLSKNHFNGSIPECLGNSN SFLKVLNLRNNELHGILPKRFAENCTLRTLDVNQNHLEGPLPRSLANCGDLEVLDVGNNFLNGSFPFWLETLPLLRVLILRSNFFGGSIIYSPSKTSFPL LQIIDLASNKFRGNLSSEWFKSWKGMMKQEKKSQSSQVLRYSYLVLTPFYYKDSVTLVNKGFNMELEKILTIFTSIDLSNNLFEGEIPEKIGDLDLLYVL NLSNNHLTGQIPSSFGKLKELGSLDLSENRLSGTIPQQLTTLTFLSVLKLSQNLLVGEIPQGNQFGTFTSAAFEGNIGLCGPPLTKTCSHALPPMEPNAD RGNGTWGIDWNYYWIGFGCGGGMGLNIGFVAGTVAINIFVMGRGRGGRRRFYTYIHQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G45616		AtRLP6	receptor like protein 6 (.1)		Potri.001G128400 [exp]	0	1
AT1G07650			Leucine-rich repeat transmembr...		Potri.018G135901 [exp]	4.24	0.7297
					Potri.013G005300 [exp]	5.47	0.7254
AT1G68460		ATIPT1	Arabidopsis thaliana isopenten...		Potri.010G123801 [exp]	17.74	0.6120
					Potri.003G046750 [exp]	21.63	0.6797
					Potri.004G103350 [exp]	22.13	0.6685
AT1G76750			Protein of unknown function (D...		Potri.001G306700 [exp]	23.36	0.6603
AT1G68500			unknown protein		Potri.010G124700 [exp]	27.65	0.6859
AT3G02280			Flavodoxin family protein (.1)		Potri.011G027100 [exp]	34.17	0.6481
					Potri.012G124633 [exp]	35.14	0.6432
					Potri.009G014750 [exp]	35.25	0.6667

Compare expression of checked genes

Potri.001G128400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.