Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G61590 623 / 0 Protein kinase superfamily protein (.1) AT2G05940 466 / 8e-163 RIPK RPM1-induced protein kinase, Protein kinase superfamily protein (.1) AT5G01020 449 / 4e-157 Protein kinase superfamily protein (.1) AT5G35580 439 / 1e-151 Protein kinase superfamily protein (.1) AT2G26290 424 / 1e-146 ARSK1 root-specific kinase 1 (.1) AT5G15080 414 / 8e-142 Protein kinase superfamily protein (.1) AT3G28690 402 / 5e-139 Protein kinase superfamily protein (.1.2.3) AT3G01300 401 / 6e-137 Protein kinase superfamily protein (.1) AT1G72540 395 / 3e-135 Protein kinase superfamily protein (.1) AT2G07180 394 / 8e-135 Protein kinase superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G105400 [exp] 754 / 0 AT1G61590 597 / 0.0 Protein kinase superfamily protein (.1) Potri.006G141500 [exp] 477 / 4e-167 AT2G05940 638 / 0.0 RPM1-induced protein kinase, Protein kinase superfamily protein (.1) Potri.006G219300 [exp] 456 / 6e-159 AT2G05940 536 / 0.0 RPM1-induced protein kinase, Protein kinase superfamily protein (.1) Potri.016G143200 [exp] 452 / 1e-157 AT5G01020 655 / 0.0 Protein kinase superfamily protein (.1) Potri.006G113600 [exp] 450 / 4e-157 AT5G01020 664 / 0.0 Protein kinase superfamily protein (.1) Potri.003G066300 [exp] 430 / 7e-149 AT2G05940 540 / 0.0 RPM1-induced protein kinase, Protein kinase superfamily protein (.1) Potri.001G168000 [exp] 424 / 1e-146 AT2G05940 519 / 0.0 RPM1-induced protein kinase, Protein kinase superfamily protein (.1) Potri.001G002300 [exp] 409 / 1e-141 AT5G56460 608 / 0.0 Protein kinase superfamily protein (.1) Potri.008G194700 [exp] 410 / 1e-140 AT5G15080 671 / 0.0 Protein kinase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034757 [exp] 644 / 0 AT1G61590 624 / 0.0 Protein kinase superfamily protein (.1) Lus10033294 [exp] 600 / 0 AT1G61590 552 / 0.0 Protein kinase superfamily protein (.1) Lus10034897 [exp] 470 / 1e-163 AT2G05940 636 / 0.0 RPM1-induced protein kinase, Protein kinase superfamily protein (.1) Lus10033429 [exp] 466 / 3e-162 AT2G05940 636 / 0.0 RPM1-induced protein kinase, Protein kinase superfamily protein (.1) Lus10036762 [exp] 445 / 2e-154 AT5G01020 672 / 0.0 Protein kinase superfamily protein (.1) Lus10027638 [exp] 433 / 8e-150 AT2G05940 529 / 0.0 RPM1-induced protein kinase, Protein kinase superfamily protein (.1) Lus10011930 [exp] 433 / 1e-149 AT2G05940 530 / 0.0 RPM1-induced protein kinase, Protein kinase superfamily protein (.1) Lus10008110 [exp] 426 / 3e-147 AT2G05940 486 / 2e-170 RPM1-induced protein kinase, Protein kinase superfamily protein (.1) Lus10013148 [exp] 425 / 8e-147 AT2G05940 484 / 3e-169 RPM1-induced protein kinase, Protein kinase superfamily protein (.1) Lus10030668 [exp] 410 / 3e-140 AT5G15080 723 / 0.0 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Potri.001G128500.1 pacid=42790342 polypeptide=Potri.001G128500.1.p locus=Potri.001G128500 ID=Potri.001G128500.1.v4.1 annot-version=v4.1 ATGAAGGAATCTTCACAGCCATGGAGACCATTCACAGCTAAATATTGCTGTTCAGTTGAAGACCAAACATTCTTTGGCAACTTCAGCAGATGTAGGACAT CAAAATCAGACATTTCCAAGAACATCAATGCTCCGGCACCATCATTCAGAAGATTGTCATTCTCTGACCTTAGCCGTTCTTCGTCAACACGTATTAATGA GGAACTTGCACAATCTTTTGGGCCTGACTTGTTTGATTTTCAATTGAGTGAGTTACGTGCCATAACACAGAATTTTTCTAGCAATTTCTTGCTAGGAGAG GGTGGGTTTGGGACAGTGCATAAGGGTTATGTAGATGATAATTTGAGGCAAGGTTTGAAGGCTCAGGCTGTTGCTGTTAAGCTTCTTGACATTGAAGGCC TGCAAGGTCACCGTGAATGGCTGGCGGAAGTAATATTTTTAGGGCAACTTAGGCATCCAAATTTGGTTAAATTGATTGGTTATTGCTGTGAAGAAGAAGA ACGACTTCTTGTCTATGAATTTATGCCTCGAGGCAGTTTAGAGAATCACTTATTCAAAAGGATTTCAGTGTCCTTGCCATGGAGCACGAGGTTAAAGATT GCAATAGGAGCAGCCAAGGGGCTAGCCTTCTTGCATGGCGCTGAGAAGCCTGTCATATACCGTGACTTCAAAACTTCCAATGTGCTGCTAGATTCTGATT TTACGGTTAAATTATCAGATTTTGGACTCGCAAAGATGGGACCTGAAGGATCAGACACGCATGTTACCACCAGAGTGATGGGGACCTATGGATATGCTGC CCCTGAATATGTCTCAACAGGACACTTGACAACAAAAAGTGACGTTTTTAGCTTTGGGGTGGTCCTACTAGAGCTGCTTACAGGGAGGAGAGCAACGGAT AAATCAAGACCAAAGAGGGAGCAAAACATCATCGACTGGGCAAAACCTTACCTGACCAGCAGTCGCAGGTTGCGCTGTATTATAGATCCAAGACTTGCAG GCCAGTATTCTGTCAAGGGAGCGAAGCAGATGGCCCTGCTAGCACGACAATGCGTAAGTTTAAACCCCAAAGACAGGCCCAAAATGCCATCCATTGTCGA GACTCTTGAAGCCCTACAACATTACAAGGACATGGCTGTGGCTTGTGGGCAATCGCAAGCATCGACAAAATCTGCTACGAGAAATGGAGTTTCCTCTGGA GGAAGGTTGGAAGGTAGAGGTGCAAGTTATAGGAAATCAGCTCCAGTTACATCAAGCAAGAAAACATAA
AA sequence Show only first row Show all	>Potri.001G128500.1 pacid=42790342 polypeptide=Potri.001G128500.1.p locus=Potri.001G128500 ID=Potri.001G128500.1.v4.1 annot-version=v4.1 MKESSQPWRPFTAKYCCSVEDQTFFGNFSRCRTSKSDISKNINAPAPSFRRLSFSDLSRSSSTRINEELAQSFGPDLFDFQLSELRAITQNFSSNFLLGE GGFGTVHKGYVDDNLRQGLKAQAVAVKLLDIEGLQGHREWLAEVIFLGQLRHPNLVKLIGYCCEEEERLLVYEFMPRGSLENHLFKRISVSLPWSTRLKI AIGAAKGLAFLHGAEKPVIYRDFKTSNVLLDSDFTVKLSDFGLAKMGPEGSDTHVTTRVMGTYGYAAPEYVSTGHLTTKSDVFSFGVVLLELLTGRRATD KSRPKREQNIIDWAKPYLTSSRRLRCIIDPRLAGQYSVKGAKQMALLARQCVSLNPKDRPKMPSIVETLEALQHYKDMAVACGQSQASTKSATRNGVSSG GRLEGRGASYRKSAPVTSSKKT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G61590			Protein kinase superfamily pro...		Potri.001G128500 [exp]	0	1
AT1G22370		ATUGT85A5	UDP-glucosyl transferase 85A5 ...		Potri.016G021600 [exp]	1.41	0.9855
AT1G22360		ATUGT85A2, AT2	UDP-glucosyl transferase 85A2 ...		Potri.016G021100 [exp]	2.44	0.9762
AT1G04520		PDLP2	plasmodesmata-located protein ...		Potri.013G048200 [exp]	4.89	0.9709
AT5G23190		CYP86B1	"cytochrome P450, family 86, s...		Potri.005G092200 [exp]	6.00	0.9699
AT1G49000			unknown protein		Potri.010G130600 [exp]	7.34	0.9691
AT2G43390			unknown protein		Potri.007G130200 [exp]	7.41	0.9696
AT3G28960			Transmembrane amino acid trans...		Potri.010G169000 [exp]	8.00	0.9406
AT3G24020			Disease resistance-responsive ...		Potri.003G174300 [exp]	8.94	0.9652
AT2G37360		ABCG2	ATP-binding cassette G2, ABC-2...		Potri.014G080200 [exp]	10.19	0.9653
AT3G05390			unknown protein		Potri.017G135100 [exp]	10.24	0.9632

Compare expression of checked genes

Potri.001G128500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.