Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G31420 929 / 0 FEI1 FEI 1, Leucine-rich repeat protein kinase family protein (.1.2) AT2G35620 871 / 0 FEI2 FEI 2, Leucine-rich repeat protein kinase family protein (.1.2) AT5G62710 596 / 0 Leucine-rich repeat protein kinase family protein (.1) AT1G71830 340 / 5e-109 ATSERK1, SERK1 somatic embryogenesis receptor-like kinase 1 (.1) AT2G13790 333 / 3e-106 BAK7, BKK1, ATSERK4 BAK1-LIKE 1, BRI1- ASSOCIATED KINASE 7, somatic embryogenesis receptor-like kinase 4 (.1) AT4G33430 332 / 5e-106 SERK3, RKS10, ELG, BAK1, ATSERK3, ATBAK1 RECEPTOR KINASES LIKE SERK 10, ELONGATED, SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 3, BRI1-associated receptor kinase (.1.2) AT5G07280 332 / 3e-101 EXS, EMS1 EXTRA SPOROGENOUS CELLS, EXCESS MICROSPOROCYTES1, Leucine-rich repeat transmembrane protein kinase (.1) AT5G10290 318 / 2e-100 leucine-rich repeat transmembrane protein kinase family protein (.1) AT5G45780 316 / 6e-100 Leucine-rich repeat protein kinase family protein (.1) AT3G25560 317 / 7e-100 NIK2 NSP-interacting kinase 2 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G105000 [exp] 1123 / 0 AT1G31420 893 / 0.0 FEI 1, Leucine-rich repeat protein kinase family protein (.1.2) Potri.012G071100 [exp] 619 / 0 AT5G62710 943 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.005G083300 [exp] 355 / 1e-114 AT1G71830 981 / 0.0 somatic embryogenesis receptor-like kinase 1 (.1) Potri.007G082400 [exp] 351 / 3e-113 AT1G34210 954 / 0.0 somatic embryogenesis receptor-like kinase 2 (.1) Potri.007G094500 [exp] 337 / 1e-107 AT5G10290 837 / 0.0 leucine-rich repeat transmembrane protein kinase family protein (.1) Potri.003G023000 [exp] 333 / 2e-106 AT4G33430 961 / 0.0 RECEPTOR KINASES LIKE SERK 10, ELONGATED, SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 3, BRI1-associated receptor kinase (.1.2) Potri.001G206700 [exp] 328 / 2e-104 AT4G33430 927 / 0.0 RECEPTOR KINASES LIKE SERK 10, ELONGATED, SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 3, BRI1-associated receptor kinase (.1.2) Potri.017G108000 [exp] 321 / 1e-101 AT5G16000 995 / 0.0 NSP-interacting kinase 1 (.1) Potri.011G068700 [exp] 320 / 2e-101 AT5G45780 819 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034753 [exp] 963 / 0 AT1G31420 893 / 0.0 FEI 1, Leucine-rich repeat protein kinase family protein (.1.2) Lus10033291 [exp] 821 / 0 AT1G31420 769 / 0.0 FEI 1, Leucine-rich repeat protein kinase family protein (.1.2) Lus10033104 [exp] 609 / 0 AT5G62710 934 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10036672 [exp] 608 / 0 AT5G62710 936 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10034739 [exp] 414 / 1e-141 AT1G31420 406 / 3e-139 FEI 1, Leucine-rich repeat protein kinase family protein (.1.2) Lus10000629 [exp] 332 / 8e-106 AT5G10290 914 / 0.0 leucine-rich repeat transmembrane protein kinase family protein (.1) Lus10015484 [exp] 317 / 1e-99 AT2G23950 910 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10019963 [exp] 317 / 2e-99 AT2G23950 907 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10006056 [exp] 315 / 2e-99 AT1G71830 731 / 0.0 somatic embryogenesis receptor-like kinase 1 (.1) Lus10007292 [exp] 311 / 2e-98 AT5G45780 801 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0016 [poplar] [flax] PF08263 [poplar] [flax] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.001G129000.2 pacid=42792403 polypeptide=Potri.001G129000.2.p locus=Potri.001G129000 ID=Potri.001G129000.2.v4.1 annot-version=v4.1 ATGGCCATCTATCCAATGAGATGTCTAAGGCCCTGGCTTCTTTACATTCTACTGCTATATATTCTCATAAACAAAAGTGGAGCTATCAGTCCTGATGGTG AAGCACTTTGGAGCTTCAGGAATGCAATTGTCAGCTCAGATGGTATTCTTCCTTTGTGGAGGCCAGAGGATGCTGATCCATGTAATTGGAGGGGAGTGAC ATGTGATCTGAAAACCAAGAGAGTAATATATTTGAGTCTGAAGAACCATAAATTAAGTGGACCCATATCACCTGACCTTGGGAAGTTAGCGCACTTGAAA ATTCTAGCTCTATACAACAACAGCTTCTATGGAACAATTCCTTCAGAGTTGGGAAATTGCACAGAGTTGCAGGGAATATTCTTGCAAGGCAACTACTTAA GTGGACCAATTCCAAGCGAAATGGGAAACCTAACTGCACTTCAAAATCTGGATATCTCAAGTAACTCTCTCAGCGGTTCAATCCCTGCATCTCTTGGAAG GTTAAATAAACTCGTAACTTTCAATGTGTCGAACAATTTTCTGGTCGGGCCGATACCATCTGATGGTGTGCTCATCAACTTTGCAGATAACTCGTTCACT GGAAATCGTGATTTGTGTGGAAAGCAGATTGAAAGAACTTGCAAAGATGACAGTGGAGGGCCCAGAACTGATGGGCAGTCTCCTTCAGGCCAAAATCAAG GAGGAAAGAAAAAATACTCTGGTGGATTGCTTATCAGCACTTCAGCAACCATTGGTGCACTGCTTCTTGTGGCACTAATGTGTTTTTGGGGATGCTTTCT ATATAAGAAGTTTGGTAAAAATGGAAGTAACAGTATTGCAATGGATGTTAGTGGAGGTGCATCGATCGTAATGTTTCATGGGGACTTGCCGTACTCTTCA AAAGACATCATAAAAAAATTAGAGACTTTGACTGAGGAACATGTCATAGGCTCTGGAGGTTTTGGAACCGTGTACAAGCTTGAAATGGATGATGGCAGTA TATTTGCCTTGAAGAGAATTGTAAAGATGGATGAGGGTTTTAATCGTTTCTTTGAGAGGGAGCTTGAAATTCTTGGAAGCATAAAACACCGCTACCTTGT TAATTTACGAGGTTATTGCAATTCTCCCACGTCAAAATTGTTGATATATGATTTCCTATCTGGTGGCAGCCTTGACGAAGCACTCCATGAAAGATCTGAG CAACTGGATTGGGATGCACGGCTGACCGTTATTTTGGGGGCAGCAAAAGGACTGGCCTACTTGCATCATGATTGTTCCCCTAGGATCATCCACCGTGACA TAAAGTCAAGCAACATTTTGCTTGATGGCAACTTGGAGGCTCGAGTGACTGATTTTGGACTTGCCAAATTGTTAGGTGATGAAGAATCACATATTACTAC AATTGTTGCTGGAACATTTGGTTATCTAGCTCCTGAATACATGCAAAGTGGCAGGGCAACTGAAAAGACTGATGTTTATAGTTTTGGGGTCCTGGTGCTT GAAGTGCTAAGTGGAAAGCGGCCAACAGATGCATCATACATCGAGAAGGGCCTGAATATTGTTGGTTGGTTAAATTTTTTAATCACGGAGAATAGACCAC GAGAAATTGTTGATCCTAACTGTGAGGGGGTGCAGGTAGAAAGCCTTGATGCCCTGCTTTCAGTTGCCACCCAATGTGTTTCTTCGAGCCCAGAGGATAG ACCCACCATGCACAGGGTGGTTCAAGTACTTGAATCTGAGGTCATGACCCCATGCCCAAGTGACTTTTATGATTCCAACTCTGATTGA
AA sequence Show only first row Show all	>Potri.001G129000.2 pacid=42792403 polypeptide=Potri.001G129000.2.p locus=Potri.001G129000 ID=Potri.001G129000.2.v4.1 annot-version=v4.1 MAIYPMRCLRPWLLYILLLYILINKSGAISPDGEALWSFRNAIVSSDGILPLWRPEDADPCNWRGVTCDLKTKRVIYLSLKNHKLSGPISPDLGKLAHLK ILALYNNSFYGTIPSELGNCTELQGIFLQGNYLSGPIPSEMGNLTALQNLDISSNSLSGSIPASLGRLNKLVTFNVSNNFLVGPIPSDGVLINFADNSFT GNRDLCGKQIERTCKDDSGGPRTDGQSPSGQNQGGKKKYSGGLLISTSATIGALLLVALMCFWGCFLYKKFGKNGSNSIAMDVSGGASIVMFHGDLPYSS KDIIKKLETLTEEHVIGSGGFGTVYKLEMDDGSIFALKRIVKMDEGFNRFFERELEILGSIKHRYLVNLRGYCNSPTSKLLIYDFLSGGSLDEALHERSE QLDWDARLTVILGAAKGLAYLHHDCSPRIIHRDIKSSNILLDGNLEARVTDFGLAKLLGDEESHITTIVAGTFGYLAPEYMQSGRATEKTDVYSFGVLVL EVLSGKRPTDASYIEKGLNIVGWLNFLITENRPREIVDPNCEGVQVESLDALLSVATQCVSSSPEDRPTMHRVVQVLESEVMTPCPSDFYDSNSD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G31420		FEI1	FEI 1, Leucine-rich repeat pro...		Potri.001G129000 [exp]	0	1
AT2G20300		ALE2	Abnormal Leaf Shape 2, Protein...		Potri.014G194300 [exp]	1.41	0.6987
AT5G52870		MAKR5	MEMBRANE-ASSOCIATED KINASE REG...		Potri.012G035700 [exp]	8.24	0.6184
AT4G01210			glycosyl transferase family 1 ...		Potri.002G166100 [exp]	14.89	0.6902
AT3G46550		FLA4, SOS5	salt overly sensitive 5, fasci...		Potri.018G097000 [exp]	21.07	0.6879
AT4G37790	HD	HAT22	Homeobox-leucine zipper protei...		Potri.005G147100 [exp]	30.00	0.6183	HAT22.2
AT4G21890			unknown protein		Potri.011G001800 [exp]	30.19	0.6674
AT5G04310			Pectin lyase-like superfamily ...		Potri.010G229000 [exp]	35.35	0.6725
AT5G42970		FUS4, EMB134, C...	FUSCA 8, FUSCA 4, EMBRYO DEFEC...		Potri.002G263200 [exp]	41.49	0.6237
AT1G69910			Protein kinase superfamily pro...		Potri.010G035300 [exp]	44.89	0.6310
AT3G13690			Protein kinase protein with ad...		Potri.001G200000 [exp]	50.36	0.5847

Compare expression of checked genes

Potri.001G129000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.