Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	EIF2.5
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G04170 866 / 0 EIF2 GAMMA, EIF2GAMMA eukaryotic translation initiation factor 2 gamma subunit (.1) AT4G18330 779 / 0 Translation elongation factor EF1A/initiation factor IF2gamma family protein (.1.2) AT2G18720 738 / 0 Translation elongation factor EF1A/initiation factor IF2gamma family protein (.1) AT4G20360 79 / 2e-15 AtRab8D, AtRABE1b RAB GTPase homolog E1B (.1) AT4G02930 76 / 9e-15 GTP binding Elongation factor Tu family protein (.1) AT1G18070 49 / 5e-06 Translation elongation factor EF1A/initiation factor IF2gamma family protein (.1.2.3) AT5G10630 46 / 5e-05 Translation elongation factor EF1A/initiation factor IF2gamma family protein (.1.2) AT5G08650 43 / 0.0005 Small GTP-binding protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G104900 [exp] 928 / 0 AT1G04170 848 / 0.0 eukaryotic translation initiation factor 2 gamma subunit (.1) Potri.002G215900 [exp] 82 / 1e-16 AT4G02930 752 / 0.0 GTP binding Elongation factor Tu family protein (.1) Potri.014G138100 [exp] 79 / 1e-15 AT4G02930 752 / 0.0 GTP binding Elongation factor Tu family protein (.1) Potri.003G121600 [exp] 76 / 2e-14 AT4G20360 714 / 0.0 RAB GTPase homolog E1B (.1) Potri.001G110200 [exp] 74 / 6e-14 AT4G20360 716 / 0.0 RAB GTPase homolog E1B (.1) Potri.013G093400 [exp] 48 / 1e-05 AT1G18070 797 / 0.0 Translation elongation factor EF1A/initiation factor IF2gamma family protein (.1.2.3) Potri.019G062500 [exp] 46 / 4e-05 AT1G18070 806 / 0.0 Translation elongation factor EF1A/initiation factor IF2gamma family protein (.1.2.3) Potri.006G275500 [exp] 44 / 0.0002 AT5G10630 757 / 0.0 Translation elongation factor EF1A/initiation factor IF2gamma family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024802 [exp] 886 / 0 AT1G04170 853 / 0.0 eukaryotic translation initiation factor 2 gamma subunit (.1) Lus10018734 [exp] 884 / 0 AT1G04170 852 / 0.0 eukaryotic translation initiation factor 2 gamma subunit (.1) Lus10020312 [exp] 879 / 0 AT1G04170 845 / 0.0 eukaryotic translation initiation factor 2 gamma subunit (.1) Lus10005680 [exp] 877 / 0 AT1G04170 846 / 0.0 eukaryotic translation initiation factor 2 gamma subunit (.1) Lus10008161 [exp] 83 / 8e-17 AT4G02930 759 / 0.0 GTP binding Elongation factor Tu family protein (.1) Lus10027995 [exp] 81 / 5e-16 AT4G02930 763 / 0.0 GTP binding Elongation factor Tu family protein (.1) Lus10043342 [exp] 70 / 1e-12 AT4G20360 758 / 0.0 RAB GTPase homolog E1B (.1) Lus10019493 [exp] 62 / 4e-10 AT4G20360 668 / 0.0 RAB GTPase homolog E1B (.1) Lus10041946 [exp] 62 / 6e-10 AT4G20360 754 / 0.0 RAB GTPase homolog E1B (.1) Lus10017957 [exp] 61 / 1e-09 AT4G20360 759 / 0.0 RAB GTPase homolog E1B (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00009 [poplar] [flax] GTP_EFTU Elongation factor Tu GTP binding domain CL0575 [poplar] [flax] EFTPs PF03144 [poplar] [flax] GTP_EFTU_D2 Elongation factor Tu domain 2 CL0575 [poplar] [flax] PF09173 [poplar] [flax] eIF2_C Initiation factor eIF2 gamma, C terminal
Representative CDS sequence Show only first row Show all	>Potri.001G129100.1 pacid=42793001 polypeptide=Potri.001G129100.1.p locus=Potri.001G129100 ID=Potri.001G129100.1.v4.1 annot-version=v4.1 ATGGCGCGGAAAGGTTTGATGGAACAAGATTTAAGTAAACTGGACGTGACAACGTTGCATCCACTCTCTCCTGAAGTTATATCGCGGCAGGCAACCATTA ATATAGGTACTATTGGTCATGTGGCACATGGGAAGTCTACTGTCGTCAAAGCAATTTCCGGTGTTCAGACGGTTCGTTTTAAAAATGAGTTGGAGCGTAA TATTACAATAAAGCTTGGATATGCAAACGCAAAGATATACAAGTGTGAAGATGAGCGGTGCCCTCGGCCTAAGTGCTACAAGGCATATGGAAGTGGAAAG GAAGATAATCCTATGTGTGATGTAGAAGGGTTTCAAAACTGCAGGATGAATTTGCTGAGACATGTCTCTTTTGTTGATTGCCCGGGTCATGACATTCTTA TGGCTACAATGCTTAATGGAGCAGCAATTATGGATGGTGCATTGCTGCTCATAGCTGCAAATGAGAGCTGCCCCCAACCACAGACTTCTGAACATCTTGC TGCTGTTGAAATTATGCGTCTCCAACATATTATAATTCTTCAAAATAAAGTGGATCTTATTCAGGAAAATGCAGCCATCAACCAGCACGAGGCTATTCAG AAATTTATTCAGGGAACTGTTGCTGATGGTGCACCAGTTGTGCCAATTTCTGCTCAGCTAAAGTATAACATAGATGTTGTGTGTGAGTATATTGTTAAAA AGATCCCAATTCCGGAGAGGAACTTTACCTCACCACCTAACATGATTGTTATTCGATCTTTTGATGTCAACAAACCTGGATACGAGGTTGATGAGATAAG AGGTGGTGTGGCTGGTGGAAGCATCCTCAGGGGTGTTTTGAAGGTCAATCAATTTATTGAGGTCCGTCCTGGGATCATTGTTAAGGACGAGGCTGGGAAC ATGAAGTGCACCCCAATATATACTAGAATAGTGTCATTATATGCCGAGCAGAATGAGCTACAATTTGCCGTGCCTGGAGGTCTAATTGGTGTTGGCACAA CCATGGACCCCACTTTGACACGTGCTGATAGACTTGTGGGTCAAGTTCTTGGTGATGTTGGCTCACTCCCTGAAGTTTTTGGTGAGCTTGAGGTGAATTT CTTTCTTTTGAGACGGCTTATTGGTGTCAGGACAAAGGGCTCAGAGAAGCAGGGAAAGGTTTCGAAGCTGACCAAGGGAGAGATTCTTATGTTGAACATT GGGTCCATGTCATCTGGTGCTCGAGTTCTTGCTGTGAAGAATGATTTGGCAAAACTACAACTTACTTCTCCAGTCTGCACCAGCAAGGGTGAGAAGATCG CATTGAGTCGCCGAGTGGAGAAGCACTGGCGTCTCATTGGGTGGGGTATGATTCAAGCCGGAACCACCATCGAAGTCCCACCTTGCCCCCTCTGA
AA sequence Show only first row Show all	>Potri.001G129100.1 pacid=42793001 polypeptide=Potri.001G129100.1.p locus=Potri.001G129100 ID=Potri.001G129100.1.v4.1 annot-version=v4.1 MARKGLMEQDLSKLDVTTLHPLSPEVISRQATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDERCPRPKCYKAYGSGK EDNPMCDVEGFQNCRMNLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIMRLQHIIILQNKVDLIQENAAINQHEAIQ KFIQGTVADGAPVVPISAQLKYNIDVVCEYIVKKIPIPERNFTSPPNMIVIRSFDVNKPGYEVDEIRGGVAGGSILRGVLKVNQFIEVRPGIIVKDEAGN MKCTPIYTRIVSLYAEQNELQFAVPGGLIGVGTTMDPTLTRADRLVGQVLGDVGSLPEVFGELEVNFFLLRRLIGVRTKGSEKQGKVSKLTKGEILMLNI GSMSSGARVLAVKNDLAKLQLTSPVCTSKGEKIALSRRVEKHWRLIGWGMIQAGTTIEVPPCPL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G04170		EIF2 GAMMA, EIF...	eukaryotic translation initiat...		Potri.001G129100 [exp]	0	1	EIF2.5
AT1G72550			tRNA synthetase beta subunit f...		Potri.018G070200 [exp]	2.64	0.8884
AT5G39740		OLI7, RPL5B	OLIGOCELLULA 7, ribosomal prot...		Potri.014G197100 [exp]	6.00	0.8942
AT4G09320		NDPK1	Nucleoside diphosphate kinase ...		Potri.014G049900 [exp]	7.61	0.8589
AT5G25757			RNA polymerase I-associated fa...		Potri.006G241300 [exp]	7.93	0.8961
AT3G09630			Ribosomal protein L4/L1 family...		Potri.016G084400 [exp]	8.30	0.9017	Pt-RPL4.2
AT1G56070		LOS1, AT1G56075...	LOW EXPRESSION OF OSMOTICALLY ...		Potri.007G065700 [exp]	10.53	0.8539	LOS1.1
AT1G33140		PGY2	PIGGYBACK2, Ribosomal protein ...		Potri.001G453900 [exp]	12.80	0.8996
AT2G40010			Ribosomal protein L10 family p...		Potri.008G066300 [exp]	16.70	0.8820
AT1G27400			Ribosomal protein L22p/L17e fa...		Potri.012G096600 [exp]	19.74	0.8901	Pt-RPL17.1
AT5G67500		VDAC2, ATVDAC2	ARABIDOPSIS THALIANA VOLTAGE D...		Potri.014G016300 [exp]	22.97	0.8328

Compare expression of checked genes

Potri.001G129100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.