Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	CYP89A27P
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G12560 100 / 3e-23 CPR1, CPR30 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) AT3G07870 88 / 6e-19 F-box and associated interaction domains-containing protein (.1) AT5G65850 81 / 2e-16 F-box and associated interaction domains-containing protein (.1) AT4G22390 75 / 1e-14 F-box associated ubiquitination effector family protein (.1) AT3G23960 69 / 2e-12 F-box and associated interaction domains-containing protein (.1) AT3G06240 68 / 2e-12 F-box family protein (.1) AT3G21120 68 / 3e-12 F-box and associated interaction domains-containing protein (.1) AT3G23260 66 / 1e-11 F-box and associated interaction domains-containing protein (.1) AT1G71320 64 / 3e-11 F-box family protein (.1) AT1G53790 65 / 4e-11 F-box and associated interaction domains-containing protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G130600 [exp] 202 / 5e-61 AT3G07870 97 / 1e-21 F-box and associated interaction domains-containing protein (.1) Potri.008G215800 [exp] 149 / 1e-40 AT3G07870 101 / 3e-23 F-box and associated interaction domains-containing protein (.1) Potri.011G137200 [exp] 146 / 1e-39 AT3G07870 94 / 1e-20 F-box and associated interaction domains-containing protein (.1) Potri.008G215901 [exp] 144 / 5e-39 AT3G07870 103 / 3e-24 F-box and associated interaction domains-containing protein (.1) Potri.001G129200 [exp] 139 / 2e-37 AT3G07870 110 / 8e-27 F-box and associated interaction domains-containing protein (.1) Potri.011G037200 [exp] 136 / 3e-36 AT3G07870 134 / 6e-35 F-box and associated interaction domains-containing protein (.1) Potri.011G037312 [exp] 135 / 9e-36 AT3G07870 134 / 3e-35 F-box and associated interaction domains-containing protein (.1) Potri.004G000900 [exp] 131 / 3e-34 AT4G12560 87 / 2e-18 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.008G216223 [exp] 123 / 4e-32 AT3G07870 93 / 4e-21 F-box and associated interaction domains-containing protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037892 [exp] 97 / 3e-22 AT3G06240 107 / 7e-26 F-box family protein (.1) Lus10036105 [exp] 95 / 4e-21 AT3G07870 206 / 1e-61 F-box and associated interaction domains-containing protein (.1) Lus10038606 [exp] 94 / 6e-21 AT3G07870 112 / 1e-27 F-box and associated interaction domains-containing protein (.1) Lus10039024 [exp] 91 / 9e-20 AT4G12560 333 / 3e-111 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Lus10001105 [exp] 87 / 2e-18 AT3G06240 109 / 3e-26 F-box family protein (.1) Lus10012355 [exp] 85 / 5e-18 AT3G07870 393 / 2e-135 F-box and associated interaction domains-containing protein (.1) Lus10018008 [exp] 85 / 8e-18 AT3G16210 82 / 6e-17 F-box family protein (.1) Lus10038603 [exp] 82 / 6e-17 AT3G06240 110 / 2e-26 F-box family protein (.1) Lus10008871 [exp] 80 / 3e-16 AT4G12560 135 / 1e-35 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Lus10006403 [exp] 77 / 2e-15 AT3G07870 362 / 2e-124 F-box and associated interaction domains-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0162 [poplar] [flax] FBA PF07734 [poplar] [flax] FBA_1 F-box associated CL0271 [poplar] [flax] F-box PF12937 [poplar] [flax] F-box-like F-box-like
Representative CDS sequence Show only first row Show all	>Potri.001G129400.2 pacid=42790625 polypeptide=Potri.001G129400.2.p locus=Potri.001G129400 ID=Potri.001G129400.2.v4.1 annot-version=v4.1 ATGACGGATCCAACGCGTCGCCACCATGCAAATGCTTCATCCAGAATCAAGAAGCGGAAGCCGGAAGCCACTGAATGCTCCATATCAAGGCTTCCTGACG ACATGCTCAGGGTCATCTTTTGCAAACTCCCAATCGGAATGCTTCTAAATGATTGCAGGCATGTTTGCAAGTCATGGGGAGCTATTCTCTTAGACCCTGA TTTTGGCAATCTTTACCTATCCCTTAAAGAACCCTCCACCTTGTTTCTCTGCATGAAAGACTACACAACCCTCCACTGGCTTGAATTTCAAGGAGAACAA TGCTTCTTTAATCCTGTTGCCAACTTCATCAAGAAATATCAGTTTGTCAATTCTTGCAATGGATTGCTTTATTTACGCGAATATAGGTCTAGAAATCCTT ATTTTGACGATCTCGTAATGTACATTTTGAATCCTGTCACGGGGGAGTATATGTGTGTCCCACCTGCTGAAGTGGGGAGGGATTTGGAGACGGGATTAAG TGGACTTGGTTTTAGCCCCCAAACCAATGAATTTAAGGCTATTAGAATTTACAAGCTAGATGTGAAGAACGATTTGCAAGCCGATGTGTATACACTTGGC AATGGCAGTTGGAAAACTGTTGGGACTGCCCCAGATATTTTGGAGTCTTGTTTGTTTTACCATTGGGGTTATATGAAAGCATTTGTCAATGGTGCGTTTC ACTGGCTTCTCGTGGATATGGATGATGATTTGGATCAAATAATCACTTTTGATTTTGAAACTGAGCAATTCGGATCGATTGCATTGCCTGAAATTGTTGA ATTCGAGGGCTATCAAATACTCAATCTTGGGGTTTTGGGAGACTCTATTTATTTCTGCGGTCATGACAAGATTGAAAGTGCAGAGTCTAAGGAGATATGG GTAATGCGACAGTATGGTGTTGTGGAGTCATGGACTAAAATGTTTGTCATTGAGAACGAAGTTGGGGTTCAGAATCCGTTTATTTTCAGAGCGATAGCTG TCTTCGACAATGGAGATGTTTTGTTGTTGTGGGATAAAACTCTGGTTTGGTATGATCAAGAAACTGAAAGTTACACATTGCTGAGTATAGAAGGAAGAGC AATTGTTCATGAACTGAGGTTTGCTTTGCTCAAAGATGATGCAAAGGGAGATGGCCCAAAGGTATCCAGAGTCTGA
AA sequence Show only first row Show all	>Potri.001G129400.2 pacid=42790625 polypeptide=Potri.001G129400.2.p locus=Potri.001G129400 ID=Potri.001G129400.2.v4.1 annot-version=v4.1 MTDPTRRHHANASSRIKKRKPEATECSISRLPDDMLRVIFCKLPIGMLLNDCRHVCKSWGAILLDPDFGNLYLSLKEPSTLFLCMKDYTTLHWLEFQGEQ CFFNPVANFIKKYQFVNSCNGLLYLREYRSRNPYFDDLVMYILNPVTGEYMCVPPAEVGRDLETGLSGLGFSPQTNEFKAIRIYKLDVKNDLQADVYTLG NGSWKTVGTAPDILESCLFYHWGYMKAFVNGAFHWLLVDMDDDLDQIITFDFETEQFGSIALPEIVEFEGYQILNLGVLGDSIYFCGHDKIESAESKEIW VMRQYGVVESWTKMFVIENEVGVQNPFIFRAIAVFDNGDVLLLWDKTLVWYDQETESYTLLSIEGRAIVHELRFALLKDDAKGDGPKVSRV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G12560		CPR1, CPR30	CONSTITUTIVE EXPRESSER OF PR G...		Potri.001G129400 [exp]	0	1	CYP89A27P
AT4G22330		ATCES1	Alkaline phytoceramidase (aPHC...		Potri.011G023401 [exp]	1.41	0.9305
AT1G10330			Tetratricopeptide repeat (TPR)...		Potri.018G003300 [exp]	2.82	0.8834
AT3G28610			P-loop containing nucleoside t...		Potri.012G072300 [exp]	4.69	0.8652
AT4G27940		ATMTM1	ARABIDOPSIS MANGANESE TRACKING...		Potri.012G032100 [exp]	5.65	0.8347
AT3G47610			transcription regulators;zinc ...		Potri.003G168100 [exp]	6.92	0.8620
					Potri.005G218650 [exp]	7.14	0.8882
AT5G47540			Mo25 family protein (.1)		Potri.016G011300 [exp]	8.36	0.8733
AT1G49960			Xanthine/uracil permease famil...		Potri.001G292600 [exp]	9.48	0.8664
AT5G66360		DIM1B	adenosine dimethyl transferase...		Potri.006G264101 [exp]	10.58	0.8468
AT1G69480			EXS (ERD1/XPR1/SYG1) family pr...		Potri.010G165400 [exp]	10.90	0.8427

Compare expression of checked genes

Potri.001G129400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.