Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G23640 1462 / 0 HGL1 heteroglycan glucosidase 1 (.1.2) AT5G63840 332 / 3e-98 PSL5, RSW3 RADIAL SWELLING 3, PRIORITY IN SWEET LIFE 5, Glycosyl hydrolases family 31 protein (.1) AT5G11720 285 / 9e-82 Glycosyl hydrolases family 31 protein (.1) AT3G45940 273 / 1e-77 Glycosyl hydrolases family 31 protein (.1) AT1G68560 248 / 2e-68 AXY3, TRG1, XYL1, ATXYL1 thermoinhibition resistant germination 1, altered xyloglucan 3, alpha-xylosidase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G069000 [exp] 319 / 2e-93 AT5G63840 1405 / 0.0 RADIAL SWELLING 3, PRIORITY IN SWEET LIFE 5, Glycosyl hydrolases family 31 protein (.1) Potri.007G100000 [exp] 315 / 3e-92 AT5G63840 1427 / 0.0 RADIAL SWELLING 3, PRIORITY IN SWEET LIFE 5, Glycosyl hydrolases family 31 protein (.1) Potri.011G154200 [exp] 281 / 6e-80 AT5G11720 1189 / 0.0 Glycosyl hydrolases family 31 protein (.1) Potri.011G154300 [exp] 275 / 4e-78 AT5G11720 1194 / 0.0 Glycosyl hydrolases family 31 protein (.1) Potri.011G154500 [exp] 271 / 1e-76 AT5G11720 1215 / 0.0 Glycosyl hydrolases family 31 protein (.1) Potri.001G442800 [exp] 270 / 2e-76 AT5G11720 1167 / 0.0 Glycosyl hydrolases family 31 protein (.1) Potri.010G125800 [exp] 260 / 1e-72 AT1G68560 1422 / 0.0 thermoinhibition resistant germination 1, altered xyloglucan 3, alpha-xylosidase 1 (.1) Potri.008G120000 [exp] 255 / 7e-71 AT1G68560 1465 / 0.0 thermoinhibition resistant germination 1, altered xyloglucan 3, alpha-xylosidase 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035671 [exp] 1415 / 0 AT3G23640 1456 / 0.0 heteroglycan glucosidase 1 (.1.2) Lus10033490 [exp] 303 / 9e-88 AT5G63840 1444 / 0.0 RADIAL SWELLING 3, PRIORITY IN SWEET LIFE 5, Glycosyl hydrolases family 31 protein (.1) Lus10020887 [exp] 296 / 3e-85 AT5G63840 1435 / 0.0 RADIAL SWELLING 3, PRIORITY IN SWEET LIFE 5, Glycosyl hydrolases family 31 protein (.1) Lus10038408 [exp] 276 / 2e-78 AT5G11720 1150 / 0.0 Glycosyl hydrolases family 31 protein (.1) Lus10008067 [exp] 275 / 4e-77 AT5G11720 1072 / 0.0 Glycosyl hydrolases family 31 protein (.1) Lus10035020 [exp] 257 / 1e-71 AT1G68560 1238 / 0.0 thermoinhibition resistant germination 1, altered xyloglucan 3, alpha-xylosidase 1 (.1) Lus10041457 [exp] 243 / 6e-67 AT1G68560 1455 / 0.0 thermoinhibition resistant germination 1, altered xyloglucan 3, alpha-xylosidase 1 (.1) Lus10034315 [exp] 243 / 1e-66 AT1G68560 1454 / 0.0 thermoinhibition resistant germination 1, altered xyloglucan 3, alpha-xylosidase 1 (.1) Lus10035019 [exp] 242 / 2e-66 AT1G68560 1195 / 0.0 thermoinhibition resistant germination 1, altered xyloglucan 3, alpha-xylosidase 1 (.1) Lus10000779 [exp] 131 / 1e-32 AT5G11720 473 / 1e-160 Glycosyl hydrolases family 31 protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [poplar] [flax] Glyco_hydro_tim PF01055 [poplar] [flax] Glyco_hydro_31 Glycosyl hydrolases family 31 CL0103 [poplar] [flax] Gal_mutarotase PF13802 [poplar] [flax] Gal_mutarotas_2 Galactose mutarotase-like
Representative CDS sequence Show only first row Show all	>Potri.001G129600.2 pacid=42791918 polypeptide=Potri.001G129600.2.p locus=Potri.001G129600 ID=Potri.001G129600.2.v4.1 annot-version=v4.1 ATGGAAACAGTACTGGTGGGCAGTAGTGGACAACAACGTGGACTAACACCGACAATCTCAAAGCTTAGGCATCATCATAAACTCCCTCCTCCTCACTCTC TCTTCCCCACTTCAACAACCACCTGCACATCAGCCGTTACACTCGCTTCCAGAAAGAGGAGGCTTAATAAGAAGTTAAGTTGCAGGGGATTGATGTCAAA AATGGCTGATCATGATCAAGCTAAGGTAGTCGCTGCTGATGTTGTCTCAGGGGATATGATTTTTCAGCCTATCTTGGAGGATGGGATTTTTCGATTTGAT TGTTCTGCAGAAGCTAGAGCTGCTTCATATCCCAGCCTTTCATTCATCCGTAGCTCAGATAGGGACACGCCAATCATGAGTCACAGTGTTCCTTCATATA CCCCTACTTATGAATGTGTTTCTGGGAAGCAGATTGTTAAATTCGAGTTTCCTGATGGTACCACCTTTTATGGAACTGGAGAAGTTAGTGGACAGCTTGA GAGGACCGGAAAAAGAGTTTTCACATGGAACACGGATGCATGGGGTTATGGTCCTGGAACTACATCATTGTACCAGTCACATCCTTGGGTGCTGGCTGTT CTTCCAAATGGAGAGGCGTTAGGGGTTCTTGCAGACACCACGCTACGCTGTGAGATTGATCTGAGGAAGGAATCAATAATTCAGTTCATTGCTCCATCAT CGTACCCTGTTGTTACATTTGGTCTTTTTGCTTCTCCCACAGATGTTCTGAAATCTTTGTCTCACGCCATTGGAACTGTTTTTATGCCTCCAAAGTGGTC GTTAGGCTATCAACAATGCCGGTGGAGCTATGATTCAGATGAGAGAGTTCGCGAGATTGCCAGAACTTTTCGAGAGAAGGGCATACCATGTGATGTTATA TGGATGGATATTGACTACATGGATGGCTTTCGCTGTTTCACATTTGACCAGGAACGTTTTCGAGATCCACAATCTTTGGTAAAAGATCTCCATGATGATG GATTTAAAGCGATTTGGATGCTTGACCCTGGTATCAAGAAAGAAGAAGGATATTTGATCTATGACAGTGGTTCTGAAAATGATGCATGGATCAAGAAAGC AGATGGGGAGCCATTTGTTGGGGAGGTATGGCCTGGGCCCTGTGTTTTTCCTGATTTCACACAATCAAAAGTTCGCGCTTGGTGGGCTCTTTTAGTTAAA GATTTTACATCTAATGGTGTTGATGGCATATGGAATGATATGAATGAGCCAGCTGTTTTCAAAACTGTTACAAAGACGATGCCTGAGAGCAATTTACATC TAGGAGATGAAGAAATTGGAGGTTGTCAGAATCACTCACACTATCACAATGTATATGGCATGCTTATGGCAAGATCAACATATGAGGGGATGAAGTTAGC CAATGAAAATAAGCGTCCTTTTGTACTCACCAGAGCTGGATTTATTGGTAGTCAAAGGTATGCTGCAACATGGACGGGAGATAACCTTTCAAACTGGGAG CACGTACACATGTCTATCTCCATGGTACTTCAATTGGGACTCAGTGGTCAGCCACTCTCTGGACCTGATATTGGTGGATTTGCTGGAAATGCAACACCCA AACTTTTTGGAAGGTGGATGGGTGTGGGTGCTATGTTTCCTTTCTGCCGTGGGCATTCTGAAAAGAGCACAAATGATCATGAGCCATGGTCTTTTGGGGA AGAGTGTGAAGAAGTGTGCCGTCTAGCATTAAAGAGGCGCTATCGACTTCTACCACATATATACACTCTGTTTTATTTGGCACACACAACAGGTATCCCG GTGGCAACTCCAACTTTCTTTGCTGATCCAAAAGATCCTGGCTTAAGGACCACTGAAAATTCCTTCCTGCTGGGTCCTCTTCTTGTCTTTTCAAGCACCA TTGCTGATCAGGGAATGGATAGATTGCATCCAGTGCTGCCCAAGGGAATCTGGTTGAGATTTGATTTTGATGATTCACACCCGGATTTACCGACATTATA TTTGCAAGGAGGATCAATAATTCCTTTGGCTCCCCCACATCAGCATGTTGGTGAAGCAAATCTGTCAGATGACTTGACACTCCTTGTAGCTTTAGATCAA AATGGGCATGCTGAAGGATTACTATTTGAAGATGAAGGTGATGGGTATGAATTCACCAGAGGTGGATATCTGTTGACACGTTATGTCGCCGAACTTCAAT CTTCAGCTGTTACTGTCAGAGTTTCCCAAATGGAAGGATCATGGAAGAGGCCCAGACGCCGTCTGCGTGTGCAGTTATTGCTTGGTGGAGGTGCAATGCT TGACTCATGGGGCATAGATGGAGATGTCCTGAAAATCAATATGCCCACAGAAGTTGAAGTTTCTACACTGGTGTCCACCAGTGAGAAACAATACAGGACC CGGTTAGAATGTGCCAAGCATATTCCAGAGTTGGAAGAGGTTTCTGGACCCAAGGGAGTAGTGGATCTTTCAAAAGTCCCTGTTGAATTGAAAAACGGTG ATTGGATTGCTAAAGTAGTTCCCTGGATTGGAGGCAGAATTATTTCCATGGAGCACCTTCCTTCGGGAACACAGTGGCTTCATAGCAGGGTTGAGATTGA TGGATATGAAGAGTATAGTGGTACCGAGTACCGGTCAGCAGGATGTTCTGAAGAATATAGTGTCATTGAGCGGGATCTTGAGCATGCAGAAGAGGAGGAA TCTCTTATTTTAGAAGGTAATATTGGTGGAGGGCTGGTTCTTCGACGGCAGATATCTATACTCAAAGATAATCCAAAGATTCTCCAGATTGACTCTGGCA TTATAGCCCGCAGCGTTGGTGCTGGTTCTGGTGGATTTTCAAGACTGGTTTGCTTGAGAGTACACCCGGCGTTTACTCTCCTTCACCCCACTGAAACTTT TGTCTCATTCACCTCCATTGATGGATCAAAGCATGAAATATGGCCTGAATCTGGGGATCAGTTCTATCAAGAGAATCTTCTGCCTAATGGTGAATGGATG CTGGTGGATCAATGTCAGGGCTTGGCTTTAGTCAATCGGTTTAACATTAATGAGGTTTTTAAGTGTTACATCCATTGGGGAACAGGGACAGTAAATCTGG AGCTGTGGTCTGAAGATAGGCCTGTTTCAAAGCAATCACCTCTCACAGTGTCCCATGGGTATGAGGTGAGAGGAATCTCGTAG
AA sequence Show only first row Show all	>Potri.001G129600.2 pacid=42791918 polypeptide=Potri.001G129600.2.p locus=Potri.001G129600 ID=Potri.001G129600.2.v4.1 annot-version=v4.1 METVLVGSSGQQRGLTPTISKLRHHHKLPPPHSLFPTSTTTCTSAVTLASRKRRLNKKLSCRGLMSKMADHDQAKVVAADVVSGDMIFQPILEDGIFRFD CSAEARAASYPSLSFIRSSDRDTPIMSHSVPSYTPTYECVSGKQIVKFEFPDGTTFYGTGEVSGQLERTGKRVFTWNTDAWGYGPGTTSLYQSHPWVLAV LPNGEALGVLADTTLRCEIDLRKESIIQFIAPSSYPVVTFGLFASPTDVLKSLSHAIGTVFMPPKWSLGYQQCRWSYDSDERVREIARTFREKGIPCDVI WMDIDYMDGFRCFTFDQERFRDPQSLVKDLHDDGFKAIWMLDPGIKKEEGYLIYDSGSENDAWIKKADGEPFVGEVWPGPCVFPDFTQSKVRAWWALLVK DFTSNGVDGIWNDMNEPAVFKTVTKTMPESNLHLGDEEIGGCQNHSHYHNVYGMLMARSTYEGMKLANENKRPFVLTRAGFIGSQRYAATWTGDNLSNWE HVHMSISMVLQLGLSGQPLSGPDIGGFAGNATPKLFGRWMGVGAMFPFCRGHSEKSTNDHEPWSFGEECEEVCRLALKRRYRLLPHIYTLFYLAHTTGIP VATPTFFADPKDPGLRTTENSFLLGPLLVFSSTIADQGMDRLHPVLPKGIWLRFDFDDSHPDLPTLYLQGGSIIPLAPPHQHVGEANLSDDLTLLVALDQ NGHAEGLLFEDEGDGYEFTRGGYLLTRYVAELQSSAVTVRVSQMEGSWKRPRRRLRVQLLLGGGAMLDSWGIDGDVLKINMPTEVEVSTLVSTSEKQYRT RLECAKHIPELEEVSGPKGVVDLSKVPVELKNGDWIAKVVPWIGGRIISMEHLPSGTQWLHSRVEIDGYEEYSGTEYRSAGCSEEYSVIERDLEHAEEEE SLILEGNIGGGLVLRRQISILKDNPKILQIDSGIIARSVGAGSGGFSRLVCLRVHPAFTLLHPTETFVSFTSIDGSKHEIWPESGDQFYQENLLPNGEWM LVDQCQGLALVNRFNINEVFKCYIHWGTGTVNLELWSEDRPVSKQSPLTVSHGYEVRGIS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G23640		HGL1	heteroglycan glucosidase 1 (.1...		Potri.001G129600 [exp]	0	1
AT5G15080			Protein kinase superfamily pro...		Potri.017G077300 [exp]	2.00	0.8507
AT5G15080			Protein kinase superfamily pro...		Potri.004G123800 [exp]	3.00	0.8345
AT5G05800			unknown protein		Potri.015G137800 [exp]	4.89	0.8302
					Potri.008G087700 [exp]	5.91	0.8307
AT3G17920			Outer arm dynein light chain 1...		Potri.012G045300 [exp]	7.48	0.8334
AT4G33420			Peroxidase superfamily protein...		Potri.004G134800 [exp]	7.74	0.8354
AT2G17820		AHK1, ATHK1	histidine kinase 1 (.1)		Potri.005G111700 [exp]	10.48	0.8120	ATHK1.3
AT2G21470		EMB2764, ATSAE2...	EMBRYO DEFECTIVE 2764, SUMO-ac...		Potri.009G120200 [exp]	10.67	0.7966
AT5G20270		HHP1	heptahelical transmembrane pro...		Potri.018G124754 [exp]	10.95	0.7770
AT2G17820		AHK1, ATHK1	histidine kinase 1 (.1)		Potri.007G056400 [exp]	13.67	0.8049	Pt-ATHK1.2

Compare expression of checked genes

Potri.001G129600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.