Plant FIBer expression Database

Potri.001G129700 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G33520 345 / 7e-115 MOS2 modifier of snc1, 2, D111/G-patch domain-containing protein (.1)
AT4G25020 158 / 7e-44 D111/G-patch domain-containing protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.003G104200
[exp]
602 / 0 AT1G33520 339 / 2e-112 modifier of snc1, 2, D111/G-patch domain-containing protein (.1)
Potri.010G204900
[exp]
42 / 0.0005 AT1G55460 561 / 0.0 DNA/RNA-binding protein Kin17, conserved region (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10004607
[exp]
395 / 2e-134 AT1G33520 396 / 8e-135 modifier of snc1, 2, D111/G-patch domain-containing protein (.1)
Lus10004541
[exp]
385 / 2e-130 AT1G33520 381 / 9e-129 modifier of snc1, 2, D111/G-patch domain-containing protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0449 G-PATCH PF12656 G-patch_2 G-patch domain
Representative CDS sequence
>Potri.001G129700.1 pacid=42793232 polypeptide=Potri.001G129700.1.p locus=Potri.001G129700 ID=Potri.001G129700.1.v4.1 annot-version=v4.1
ATGAAGCTCTCCTTCTCAATTCCATCAAATTCGAATTCGAAGGCAAAAAAACCAGTCTCAGACAAAGACGAAGGCCAATCAGACGATAACAACACCAAAC
AATATGTCACCGAATTCGATCCCACAAAAACCCTACAAAGCACTCGAACCCCAATTATCCAACCTATACAAAACGAATACCAACCCCACAAAAAATTGAA
AAACATCGATCTCCTTCTCCACCCTGACCCCTCCACAGACCTCCGTTTCGAACTCCAAACCCTCTCCCCCGACCCCCCTGATCCCATGTCTTTCGGCCTC
AATCTCCGTCAGCCCACCGCCACCGCCACTTCTCTGACCAAAGAAGCTAGAGTTGAGGATGAGATGTTGGAGAAATTGAGGTATGATTTGAAGAGGTTGC
CAGAGGATCGAGGGTTTGAGGAGTTTGAAGAAATGCCAGTTGAGGATTTTGCCAAAGCGTTGCTTAAGGGTTATGGTTGGCATGAAGGGAGAGGTGTTGG
AAAGAATGCTAAAGAAGATGTTAAAATCAAGCAGTACACTAAAAGAACTGATAAAGAAGGTTTGGGCTTTTTTTCTGCTTCACTTGATTCAAAAAATAGT
AATAAAAATAGTAGCAATGGTGATGGTAGTGGTAGTGTTAAAGAGAAAGAATCAGAGAAGAATAAAGATGGGTTTTCTGTGGGTAAAGAAGTTAGAGTGT
TTTTTGGTAAAAAGGAAAATTTGGGTTTGAAAGGTACGATTGTAGATAGGCTGGGTTCGGATTCGATTATTTTGAGGGTAGAAAAGAGTGGGGAGAGTGT
GAAAGTTCGGGTTTCTGATGTTGCAGAATTGGGGTCGGGAGAAGAGGAGAGGTGTTTGAAGGAATTGAAGGATTTAAAGATCAAAGAAGAGAAGAAATCG
AGTGATGGGGATAGGGAACAACGGCCTGTTAATAAGAGGAGCGTGGAGAGTAGAGAAAGTTTGATAATTGGGAATGGTGGCATTGTTAAAGAGAGAGGAG
TTCAGTGGCTTAGGAGTCATATTCGGGTTAGGATAATTAGTAAGGACTTGAAAGGGGGTAAATTATATTTGAAGAAAGGAGAGGTGGTGGATGTGGTTGG
GCCTTACAAGTGTGATGTAAGTATGGATGAAAGCAGGGAGTTGGTGCAAAGTGTAGATCAGGATCTTCTTGAGAATGCATTGCCACGTCGGGGGGGTCCA
GTTCTTGTTCTTTATGGGAAGCATAGGGGAGCTTATGGGAATTTGGTTCAAAGGGACTTGGACAGAGAGGTTGGGGTTGTGCAGGATTATGGTAGCCATG
AGTTGCTTAATGTCAAACTCGAGCAAATTGCAGAATATGTTGGAGATCCTAGCTACATCGGCTATTGA
AA sequence
>Potri.001G129700.1 pacid=42793232 polypeptide=Potri.001G129700.1.p locus=Potri.001G129700 ID=Potri.001G129700.1.v4.1 annot-version=v4.1
MKLSFSIPSNSNSKAKKPVSDKDEGQSDDNNTKQYVTEFDPTKTLQSTRTPIIQPIQNEYQPHKKLKNIDLLLHPDPSTDLRFELQTLSPDPPDPMSFGL
NLRQPTATATSLTKEARVEDEMLEKLRYDLKRLPEDRGFEEFEEMPVEDFAKALLKGYGWHEGRGVGKNAKEDVKIKQYTKRTDKEGLGFFSASLDSKNS
NKNSSNGDGSGSVKEKESEKNKDGFSVGKEVRVFFGKKENLGLKGTIVDRLGSDSIILRVEKSGESVKVRVSDVAELGSGEEERCLKELKDLKIKEEKKS
SDGDREQRPVNKRSVESRESLIIGNGGIVKERGVQWLRSHIRVRIISKDLKGGKLYLKKGEVVDVVGPYKCDVSMDESRELVQSVDQDLLENALPRRGGP
VLVLYGKHRGAYGNLVQRDLDREVGVVQDYGSHELLNVKLEQIAEYVGDPSYIGY

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G33520 MOS2 modifier of snc1, 2, D111/G-pa... Potri.001G129700
[exp]
0 1
AT5G39710 EMB2745 EMBRYO DEFECTIVE 2745, Tetratr... Potri.009G105600
[exp]
1.41 0.9035
AT1G28520 VOZ ATVOZ1, VOZ1 vascular plant one zinc finger... Potri.013G123100
[exp]
2.44 0.8768
AT1G31870 unknown protein Potri.003G087200
[exp]
4.00 0.8602
Potri.017G152420
[exp]
8.30 0.8744
AT3G58630 Trihelix sequence-specific DNA binding ... Potri.001G113600
[exp]
8.60 0.8300
AT1G17620 Late embryogenesis abundant (L... Potri.003G039400
[exp]
10.09 0.8479
AT4G12290 Copper amine oxidase family pr... Potri.001G118300
[exp]
10.39 0.8539
AT5G17510 unknown protein Potri.013G076800
[exp]
11.40 0.8392
AT1G61040 VIP5 vernalization independence 5, ... Potri.004G039500
[exp]
14.07 0.8477
AT1G77030 hydrolases, acting on acid anh... Potri.005G185900
[exp]
14.49 0.8631

Potri.001G129700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.