Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G38250 115 / 4e-30 Trihelix Homeodomain-like superfamily protein (.1) AT5G01380 107 / 5e-27 Trihelix Homeodomain-like superfamily protein (.1) AT3G25990 69 / 4e-13 Trihelix Homeodomain-like superfamily protein (.1) AT1G13450 65 / 8e-12 Trihelix GT-1 GT-1, Homeodomain-like superfamily protein (.1.2.3) AT1G76890 62 / 2e-10 Trihelix AT-GT2, GT2 Duplicated homeodomain-like superfamily protein (.2) AT1G76880 60 / 8e-10 Trihelix Duplicated homeodomain-like superfamily protein (.1) AT5G63420 56 / 2e-08 Trihelix EMB2746 embryo defective 2746, RNA-metabolising metallo-beta-lactamase family protein (.1) AT5G28300 54 / 5e-08 Trihelix Duplicated homeodomain-like superfamily protein (.1) AT1G33240 53 / 1e-07 Trihelix AT-GTL2, AT-GTL1 GT2-LIKE 1, GT-2-like 1 (.1) AT5G47660 45 / 3e-05 Trihelix Homeodomain-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G104500 [exp] 315 / 5e-108 AT2G38250 118 / 3e-31 Homeodomain-like superfamily protein (.1) Potri.006G101400 [exp] 136 / 3e-38 AT5G01380 179 / 8e-55 Homeodomain-like superfamily protein (.1) Potri.016G117300 [exp] 124 / 1e-33 AT5G01380 179 / 2e-54 Homeodomain-like superfamily protein (.1) Potri.010G055000 [exp] 74 / 7e-15 AT1G13450 518 / 0.0 GT-1, Homeodomain-like superfamily protein (.1.2.3) Potri.008G179700 [exp] 71 / 1e-13 AT1G13450 541 / 0.0 GT-1, Homeodomain-like superfamily protein (.1.2.3) Potri.002G068600 [exp] 65 / 2e-11 AT1G76880 441 / 3e-148 Duplicated homeodomain-like superfamily protein (.1) Potri.002G068400 [exp] 63 / 5e-11 AT1G76890 387 / 1e-127 Duplicated homeodomain-like superfamily protein (.2) Potri.005G192000 [exp] 61 / 4e-10 AT1G76890 392 / 6e-130 Duplicated homeodomain-like superfamily protein (.2) Potri.001G309100 [exp] 59 / 2e-09 AT1G76880 350 / 2e-114 Duplicated homeodomain-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004806 [exp] 137 / 6e-38 AT5G01380 239 / 5e-77 Homeodomain-like superfamily protein (.1) Lus10002481 [exp] 81 / 1e-19 AT2G38250 91 / 4e-24 Homeodomain-like superfamily protein (.1) Lus10028584 [exp] 66 / 1e-11 AT1G76880 262 / 5e-81 Duplicated homeodomain-like superfamily protein (.1) Lus10015824 [exp] 65 / 2e-11 AT1G13450 533 / 0.0 GT-1, Homeodomain-like superfamily protein (.1.2.3) Lus10018888 [exp] 64 / 3e-11 AT1G76880 360 / 2e-117 Duplicated homeodomain-like superfamily protein (.1) Lus10036978 [exp] 63 / 4e-11 AT1G13450 523 / 0.0 GT-1, Homeodomain-like superfamily protein (.1.2.3) Lus10018887 [exp] 62 / 1e-10 AT1G76880 451 / 1e-151 Duplicated homeodomain-like superfamily protein (.1) Lus10033504 [exp] 58 / 2e-09 AT1G76890 323 / 8e-105 Duplicated homeodomain-like superfamily protein (.2) Lus10016758 [exp] 58 / 3e-09 AT5G63420 1222 / 0.0 embryo defective 2746, RNA-metabolising metallo-beta-lactamase family protein (.1) Lus10029778 [exp] 56 / 1e-08 AT1G76890 311 / 3e-96 Duplicated homeodomain-like superfamily protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [poplar] [flax] HTH PF13837 [poplar] [flax] Myb_DNA-bind_4 Myb/SANT-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Potri.001G129900.1 pacid=42787654 polypeptide=Potri.001G129900.1.p locus=Potri.001G129900 ID=Potri.001G129900.1.v4.1 annot-version=v4.1 ATGATGTTTAGTGGTGGAGGGGAAGGAGATGGGCTAGGGCGGATAAATATGATGCCAACGGCGGCGATGCTAAGTCCAACGGCGGAGATCTCGCCGAGGG GTCCACCTCAACAACAACCACAGTGGGGACAACAAGAAACGAAGGAGTTTATTGGGATTAGAGCGGAGTTGGAGAAGGATTTTACTGTGACGAAGAGGAA CAAGACTTTATGGGAGATAGTGAGTGTTAAAATGAGAGAGAAGGGTTACCGAAGGACACCCGAACAGTGTAAGTGCAAGTGGAAAAACCTCGTCAATCGC TACAAGGGAAAGGAGACATCTGATCCTGAGACTGGCCGACAATGCCCGTTCTTTGAGGAACTGCATGCAGTGTTCACTGAAAGAGCTAAGAACATGCAGC GACTACTTCTTGAATCTGAGGCAGGTTCTACTCAGTCAAGGAAAAAGATGAAAAGAACTAGTGGAGATAGATCCTCGGATGAATTCTCAGAAGAAGAAGA TGAGGATGAAGATGATAGTGAGGAGGAGAAGCCAGTCAGAAGCAATTCTAGGAAGAGGAAGGTTGAAAAAATTATAGCGGAGAAGTCTCCAAGAGCAAGC AGTAGTACTGTTGGTGGCATTCAAGAAATGCTCAAGGAGTTCTTGCAGCAGCAACAGAAGATGGAGATGCAGTGGAGAGAGATGATGGAAAGGCGTTCTC ATGAGCGGCAGATGTTTGAGCAGGAATGGCGACAGTCAATGGAGAAGCTCGAGAGGGAGAGATTAATGATTGAGCAGGCGTGGAGGGAGAGAGAAGAACA GAGGAGGATAAGAGAAGAGAGCAGGGCTGAGCGTAGAGATGCCCTGCTGACAACCCTTTTGAACAAACTCATCCGTGAAAATAATATATAA
AA sequence Show only first row Show all	>Potri.001G129900.1 pacid=42787654 polypeptide=Potri.001G129900.1.p locus=Potri.001G129900 ID=Potri.001G129900.1.v4.1 annot-version=v4.1 MMFSGGGEGDGLGRINMMPTAAMLSPTAEISPRGPPQQQPQWGQQETKEFIGIRAELEKDFTVTKRNKTLWEIVSVKMREKGYRRTPEQCKCKWKNLVNR YKGKETSDPETGRQCPFFEELHAVFTERAKNMQRLLLESEAGSTQSRKKMKRTSGDRSSDEFSEEEDEDEDDSEEEKPVRSNSRKRKVEKIIAEKSPRAS SSTVGGIQEMLKEFLQQQQKMEMQWREMMERRSHERQMFEQEWRQSMEKLERERLMIEQAWREREEQRRIREESRAERRDALLTTLLNKLIRENNI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G38250	Trihelix		Homeodomain-like superfamily p...		Potri.001G129900 [exp]	0	1
AT1G78310			VQ motif-containing protein (....		Potri.005G162300 [exp]	2.00	0.9083
AT5G65110		ATACX2, ACX2	acyl-CoA oxidase 2 (.1.2)		Potri.007G090400 [exp]	13.41	0.8779
AT2G25290		Phox1	Phox1, Octicosapeptide/Phox/Be...		Potri.018G121100 [exp]	14.42	0.8765
AT5G52430			hydroxyproline-rich glycoprote...		Potri.003G129400 [exp]	35.77	0.8752
AT4G12560		CPR1, CPR30	CONSTITUTIVE EXPRESSER OF PR G...		Potri.011G121200 [exp]	36.49	0.8523
AT5G64370		PYD3, BETA-UP	PYRIMIDINE 3, beta-ureidopropi...		Potri.007G115900 [exp]	49.88	0.8502
AT2G29640		JOSL	JOSEPHIN-like protein (.1)		Potri.001G249400 [exp]	57.14	0.8380
AT2G34930			disease resistance family prot...		Potri.010G106900 [exp]	58.20	0.8383
AT4G30080	ARF	ARF16	auxin response factor 16 (.1)		Potri.016G090300 [exp]	71.09	0.8151
AT4G26910			Dihydrolipoamide succinyltrans...		Potri.001G357000 [exp]	72.74	0.8161

Compare expression of checked genes

Potri.001G129900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.