Plant FIBer expression Database

Potri.001G130100 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G45900 281 / 8e-91 Ribonuclease P protein subunit P38-related (.1)
AT5G53020 72 / 4e-13 Ribonuclease P protein subunit P38-related (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.012G016600
[exp]
74 / 7e-14 AT5G53020 464 / 8e-153 Ribonuclease P protein subunit P38-related (.1)
Potri.015G012000
[exp]
72 / 5e-13 AT5G53020 379 / 6e-120 Ribonuclease P protein subunit P38-related (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10033275
[exp]
295 / 2e-95 AT3G45900 268 / 2e-85 Ribonuclease P protein subunit P38-related (.1)
Lus10034732
[exp]
292 / 2e-94 AT3G45900 264 / 3e-84 Ribonuclease P protein subunit P38-related (.1)
Lus10018117
[exp]
75 / 4e-14 AT5G53020 410 / 4e-133 Ribonuclease P protein subunit P38-related (.1)
Lus10022396
[exp]
75 / 5e-14 AT5G53020 414 / 1e-134 Ribonuclease P protein subunit P38-related (.1)
PFAM info
Representative CDS sequence
>Potri.001G130100.5 pacid=42789758 polypeptide=Potri.001G130100.5.p locus=Potri.001G130100 ID=Potri.001G130100.5.v4.1 annot-version=v4.1
ATGGCAGGCCAGGGAGGAGATGCAGCGAAGCCAAAACAAGACCAAGAAGAAAAACCAAGAGAAGACAAGCTCCTCTCTTCTTATTTAGGCCTGAGTTTCT
CTCTTTTTTTAGCGATTCTGCCTCCAAACTCCATTTCCTTAATACCAAACCTCCAGACCCAGATCAGAAACCTCTCAATACGCCTTTTACAAGCAGAAGA
ACAGCTAAAACAAATGAAGTCAAGGAGAAAAGAGGACTCAAAAGCAAATGCAAGAGTTGTGGAGATCTTTGCTAGCCACAGGAATGCCTGGCAAGCTGAA
GAGAAGAGGTTGCTTCAACAGATCGACTTTGCAAGTGAAGAAGTGTCTTCATTAAGAGCTAAATTTGAAGACTTTGAGAGAGAGAAGGAAGAGTGGCAAG
GAAAGATTCAAGATTTGGAGAGAGAGGTTGGTGAGAGAGAGGAAATGATTGGGTTTATGTCACGAAATGCTGTTGCTGGTGGTAGTGAGTTTGTGGGCGG
TGAGGAGGAATCTGGTAGGTGTGGGAGTGGGGAATGTTATGGTGGAGAGGAAGAGGAGGAGGAGAATGCCAATTTTGTTTATGGTCAACAGTATTATAAG
CATTTACTGCATCAGCAGCAGCAAGGGAGTGATGGAGGTTTCAGTTCTGATTTATTAGCTTCTGCGTCTAAGTTTTGGAGCGAGACAGCTAGTACTCTCT
GGCAGGATGTACAATATGATTCCCATGAATCACTCTATCACATGAAACATTTTGTAGCAAGAAGAGAGTCCCCGTGGAAGGTAGATGGTGATTCAACAGG
TGTGTCCTCTAAGTTAAAATTACTCGAAGAGGAACTTCTAAATTTGGAAAAAGTTGGAAAAACAGATATATCAAAGGTTCCATCGCTAATGAGGAAGCAG
GCAAAGAGATATCAAGCTCTAGCAGGAAAGATTGATGATCTTTGCGGAAGAATGGTGCATGGTCACAAGGAAATTATTTATTCTTATTTGAGAACAAAAA
TTCAAGCTAGTGATCCATGTGAACCTACACTCGGTCCAGAATTTCGAACACAGAGGCAGACAGAGTTTTTGCTTGAAGCATTTCGGCTCAAGGAACGGGC
ATCTGAAACTGGACAGAAGCTGTTGGCATTACAAAATGAGATCAGTAAGAGCTACTCTGGGGACGAGGTGGGGAGCCAGGCCAAGCTCACCACGAGACGT
TCCTTCGAGGCCATAAGGAACAATTTAAAAGAAGTTCAGAGAAACTTGGAAATATGGTTGGCCAGAATTATTGGAGATCTTAAAGGGATTCTGGCCAGAG
ATGGTGCCTCTTGTCAACGTGAATATTATATTTCTAGGTATCCTTTTGTTCAATAG
AA sequence
>Potri.001G130100.5 pacid=42789758 polypeptide=Potri.001G130100.5.p locus=Potri.001G130100 ID=Potri.001G130100.5.v4.1 annot-version=v4.1
MAGQGGDAAKPKQDQEEKPREDKLLSSYLGLSFSLFLAILPPNSISLIPNLQTQIRNLSIRLLQAEEQLKQMKSRRKEDSKANARVVEIFASHRNAWQAE
EKRLLQQIDFASEEVSSLRAKFEDFEREKEEWQGKIQDLEREVGEREEMIGFMSRNAVAGGSEFVGGEEESGRCGSGECYGGEEEEEENANFVYGQQYYK
HLLHQQQQGSDGGFSSDLLASASKFWSETASTLWQDVQYDSHESLYHMKHFVARRESPWKVDGDSTGVSSKLKLLEEELLNLEKVGKTDISKVPSLMRKQ
AKRYQALAGKIDDLCGRMVHGHKEIIYSYLRTKIQASDPCEPTLGPEFRTQRQTEFLLEAFRLKERASETGQKLLALQNEISKSYSGDEVGSQAKLTTRR
SFEAIRNNLKEVQRNLEIWLARIIGDLKGILARDGASCQREYYISRYPFVQ

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G45900 Ribonuclease P protein subunit... Potri.001G130100
[exp]
0 1
AT3G29320 PHS1 alpha-glucan phosphorylase 1, ... Potri.008G093901
[exp]
12.68 0.8440
AT4G02550 unknown protein Potri.010G215600
[exp]
26.72 0.8359
AT5G49580 Chaperone DnaJ-domain superfam... Potri.008G101800
[exp]
30.19 0.7905
AT2G47980 SCC3, ATSCC3 sister-chromatid cohesion prot... Potri.014G151400
[exp]
49.49 0.8070
AT1G25350 OVA9 ovule abortion 9, glutamine-tR... Potri.010G122866
[exp]
50.49 0.8043
AT5G64460 Phosphoglycerate mutase family... Potri.001G286000
[exp]
64.62 0.7685
AT1G34380 5'-3' exonuclease family prote... Potri.013G114400
[exp]
67.66 0.7479
AT5G17770 CBR1, ATCBR NADH:cytochrome B5 reductase 1... Potri.009G157000
[exp]
76.49 0.8025
AT5G40840 SYN2, ATRAD21.1 Sister chromatid cohesion 1 \(... Potri.017G067400
[exp]
83.71 0.8011 SYN2.1
AT5G01310 bHLH APTX, bHLH140 APRATAXIN-like (.1) Potri.016G120200
[exp]
96.16 0.7950

Potri.001G130100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.