Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G61360 539 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G02420 193 / 2e-55 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G77360 182 / 5e-51 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G71060 180 / 2e-50 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G62540 161 / 4e-43 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G14820 161 / 7e-43 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G62470 159 / 2e-42 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G05670 156 / 1e-40 Pentatricopeptide repeat (PPR-like) superfamily protein (.1), Pentatricopeptide repeat (PPR-like) superfamily protein (.2) AT1G20300 146 / 7e-38 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G74900 143 / 2e-37 OTP43 organelle transcript processing defect 43, Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G079400 [exp] 217 / 1e-63 AT1G02420 649 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G181900 [exp] 189 / 3e-54 AT1G77360 723 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.010G114700 [exp] 187 / 7e-53 AT1G71060 679 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G245400 [exp] 147 / 3e-38 AT1G20300 768 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.014G121400 [exp] 146 / 2e-37 AT3G62470 737 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G014500 [exp] 144 / 1e-36 AT1G09820 696 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.009G105600 [exp] 143 / 3e-36 AT5G39710 1022 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.015G070200 [exp] 140 / 6e-36 AT1G74900 590 / 0.0 organelle transcript processing defect 43, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.010G084000 [exp] 140 / 7e-36 AT3G22670 489 / 3e-168 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001784 [exp] 575 / 0 AT3G61360 490 / 2e-170 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10042362 [exp] 213 / 1e-62 AT1G02420 613 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10001588 [exp] 192 / 5e-54 AT1G77360 679 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10001633 [exp] 189 / 3e-53 AT1G71060 602 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10026306 [exp] 184 / 9e-53 AT1G02420 522 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10015741 [exp] 157 / 2e-41 AT3G62470 725 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10003461 [exp] 155 / 2e-40 AT3G62470 718 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10020243 [exp] 134 / 9e-38 AT3G61360 115 / 7e-32 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10041193 [exp] 138 / 5e-35 AT3G22670 531 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10021991 [exp] 131 / 2e-32 AT5G15010 617 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family
Representative CDS sequence Show only first row Show all	>Potri.001G130400.1 pacid=42791016 polypeptide=Potri.001G130400.1.p locus=Potri.001G130400 ID=Potri.001G130400.1.v4.1 annot-version=v4.1 ATGCTCTCTTTACTGTCCTTAAAGAAAACACATAGTACTAATCACCATCTCTTCCAAATTCCCAAAAGACTATTTGTTGCTCTTAGCCCAACAGCAACAT CAACTCAATCCATAGAAGTTGAAAGAATTGCAAGAATAATCAATGACCATCCATTTCCAAATCAACCTCTACATCCAACTCTCACCCACCATATTCCACC AACTCTCCTTACCACCGCTTTTGTTGAAAACGTTCTTGGCCGCCTCTTTGCTGCTCACTCTAATGGCCTTAAAGCCTTGGAATTCTTCAAATATTCGCTC AATAATCAAACCCATTTTTCCCCAAGTCCTGATTCCTTCGAAAAGACGCTTCACATACTTGCCCGGATGAGATATTTTGATAAAGCTTGGGATTTAATGG TTGAAATTGGAAAGACGCATCCTTTTTTGCTTACCCTTAAGTCTATGAGCATAATGTTATGTAAAATTGCTAAATTTCGATCTTATGAGGAGACCCTTGA CGCGTTTGAGAAAATGGAGAAGAGGGTTTTTGTTGGGAGGAAATTTGGCGTTGAAGAGTTTAATGTGTTACTTCGGGCATTTTGCACTGTGAGGAAATTG AAAGAGGCGAAATCTGTGTTTGTAAAGATGCATGAGAGGTTCCCTCCTAATGTTAAGACCATGAATATTTTGCTGTTGGGGTTCAAGGAATCTCGGGATG TTACTGCAATGGAGTTGTTTTATCATGAGATGGTTAAGAGGGGGTTTAAGCCTAGTAGCTCAAGTTATGGTATTAGGATTGATGCTTATTGTAAAAAGGG TTATTTTGCTGATGCTTTGAGGATTTTTGAAGAAATGGAGAGGGCTAATTGCTTGCCGACATTGGAAACAGTCACCACTTTGATTCACGGAGCAGGGGTT GCTCGAAACGCAATGAAAGCCAGGGAGTTGTTTGATGAAATTCCTAAGAGGAATTTGCAAGCTGATACTGGGGCATATAATGCACTGATTAGCTCACTAG TTAAGTGTAGGGAAGTGAAGTCTGCCATTCAGTTGATGGATGAGATGGAAAAGAACAATATTCATTATGATGATATGACCTATCATACAATGTTCTTAGG CTTGATGAAATCAGGTAGTATTGAGGGGGTTTGTGAGCTTTATCACAAGATGATTGATAGAAATTTCGTTCCCAAAACACGAACTGTGGTTATGCTGATG AAATTCTTCTGCGTGAATAGCCAGATTGATCTGGGTTTGAATTTGTGGGGATATCTGGTGGGGAAGGGGTATTGTCCTCATCATCATGCATTGGACCTTT TGGTAACAGGATTGTGTTCTAGGGGGAGGTCGCATGAAGCTTTTAAGTGCTCCAAGCAATCATTGGAGAGAGGAATCCATGTCAGCGAAGCAGTGTATGG AATGTTGGAGAGATTCTTACTACAATCTAACATGACGGACAAGCTGGGGGAGCTCAATCAGATGATAGAGAAGTTACAATCTGTTTTGCCCCCATCAAGT GGGAATTATATTCATAGTCCTTCCAATGGTATGGAGTAA
AA sequence Show only first row Show all	>Potri.001G130400.1 pacid=42791016 polypeptide=Potri.001G130400.1.p locus=Potri.001G130400 ID=Potri.001G130400.1.v4.1 annot-version=v4.1 MLSLLSLKKTHSTNHHLFQIPKRLFVALSPTATSTQSIEVERIARIINDHPFPNQPLHPTLTHHIPPTLLTTAFVENVLGRLFAAHSNGLKALEFFKYSL NNQTHFSPSPDSFEKTLHILARMRYFDKAWDLMVEIGKTHPFLLTLKSMSIMLCKIAKFRSYEETLDAFEKMEKRVFVGRKFGVEEFNVLLRAFCTVRKL KEAKSVFVKMHERFPPNVKTMNILLLGFKESRDVTAMELFYHEMVKRGFKPSSSSYGIRIDAYCKKGYFADALRIFEEMERANCLPTLETVTTLIHGAGV ARNAMKARELFDEIPKRNLQADTGAYNALISSLVKCREVKSAIQLMDEMEKNNIHYDDMTYHTMFLGLMKSGSIEGVCELYHKMIDRNFVPKTRTVVMLM KFFCVNSQIDLGLNLWGYLVGKGYCPHHHALDLLVTGLCSRGRSHEAFKCSKQSLERGIHVSEAVYGMLERFLLQSNMTDKLGELNQMIEKLQSVLPPSS GNYIHSPSNGME

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G61360			Tetratricopeptide repeat (TPR)...		Potri.001G130400 [exp]	0	1
AT5G56270	WRKY	ATWRKY2, WRKY2,...	ARABIDOPSIS THALIANA WRKY DNA-...		Potri.013G086000 [exp]	10.00	0.8177
AT5G59200		OTP80	ORGANELLE TRANSCRIPT PROCESSIN...		Potri.002G239600 [exp]	12.24	0.8372
AT4G02750			Tetratricopeptide repeat (TPR)...		Potri.012G048800 [exp]	16.37	0.8314
AT5G18390			Pentatricopeptide repeat (PPR)...		Potri.019G025700 [exp]	25.63	0.8254
AT1G73710			Pentatricopeptide repeat (PPR)...		Potri.013G144800 [exp]	28.00	0.8213
AT3G53700		MEE40	maternal effect embryo arrest ...		Potri.017G033000 [exp]	32.37	0.7882
AT3G21470			Pentatricopeptide repeat (PPR-...		Potri.002G072500 [exp]	34.74	0.7762
AT5G39350			Tetratricopeptide repeat (TPR)...		Potri.004G124400 [exp]	37.13	0.7991
AT2G33760			Pentatricopeptide repeat (PPR)...		Potri.011G052300 [exp]	38.24	0.7844
AT1G80550			Pentatricopeptide repeat (PPR)...		Potri.005G147200 [exp]	39.11	0.8120

Compare expression of checked genes

Potri.001G130400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.