Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G19150 222 / 1e-72 Ankyrin repeat family protein (.1.2) AT2G03430 76 / 3e-16 Ankyrin repeat family protein (.1) AT3G24530 75 / 3e-15 AAA-type ATPase family protein / ankyrin repeat family protein (.1) AT5G66055 74 / 5e-15 EMB16, EMB2036, AKRP EMBRYO DEFECTIVE 2036, EMBRYO DEFECTIVE 16, ankyrin repeat protein (.1.2) AT5G40160 67 / 8e-13 EMB139, EMB506 embryo defective 506, EMBRYO DEFECTIVE 139, Ankyrin repeat family protein (.1) AT5G12320 62 / 4e-12 ankyrin repeat family protein (.1) AT2G31820 65 / 9e-12 Ankyrin repeat family protein (.1) AT5G53470 64 / 1e-11 ACBP1 acyl-CoA binding protein 1 (.1) AT1G05640 62 / 5e-11 Ankyrin repeat family protein (.1) AT3G09890 61 / 6e-11 Ankyrin repeat family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G103400 [exp] 372 / 9e-132 AT4G19150 234 / 2e-77 Ankyrin repeat family protein (.1.2) Potri.010G161300 [exp] 75 / 6e-16 AT2G03430 356 / 1e-125 Ankyrin repeat family protein (.1) Potri.006G158600 [exp] 74 / 7e-15 AT3G24530 741 / 0.0 AAA-type ATPase family protein / ankyrin repeat family protein (.1) Potri.018G081000 [exp] 68 / 7e-13 AT3G24530 754 / 0.0 AAA-type ATPase family protein / ankyrin repeat family protein (.1) Potri.005G105800 [exp] 67 / 2e-12 AT5G66055 457 / 3e-159 EMBRYO DEFECTIVE 2036, EMBRYO DEFECTIVE 16, ankyrin repeat protein (.1.2) Potri.007G060400 [exp] 65 / 6e-12 AT5G66055 462 / 2e-161 EMBRYO DEFECTIVE 2036, EMBRYO DEFECTIVE 16, ankyrin repeat protein (.1.2) Potri.013G062000 [exp] 64 / 1e-11 AT2G03430 94 / 2e-21 Ankyrin repeat family protein (.1) Potri.001G295200 [exp] 63 / 3e-11 AT5G40160 317 / 4e-108 embryo defective 506, EMBRYO DEFECTIVE 139, Ankyrin repeat family protein (.1) Potri.009G070700 [exp] 59 / 7e-11 AT5G12320 197 / 6e-66 ankyrin repeat family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001414 [exp] 231 / 5e-76 AT4G19150 245 / 9e-82 Ankyrin repeat family protein (.1.2) Lus10001048 [exp] 226 / 5e-74 AT4G19150 230 / 6e-76 Ankyrin repeat family protein (.1.2) Lus10034913 [exp] 78 / 4e-16 AT3G24530 748 / 0.0 AAA-type ATPase family protein / ankyrin repeat family protein (.1) Lus10023642 [exp] 77 / 6e-16 AT3G24530 773 / 0.0 AAA-type ATPase family protein / ankyrin repeat family protein (.1) Lus10011097 [exp] 74 / 8e-16 AT3G24530 252 / 2e-82 AAA-type ATPase family protein / ankyrin repeat family protein (.1) Lus10043218 [exp] 73 / 1e-14 AT3G24530 743 / 0.0 AAA-type ATPase family protein / ankyrin repeat family protein (.1) Lus10014522 [exp] 70 / 1e-13 AT5G40160 322 / 3e-109 embryo defective 506, EMBRYO DEFECTIVE 139, Ankyrin repeat family protein (.1) Lus10021508 [exp] 66 / 5e-13 AT3G09890 209 / 5e-69 Ankyrin repeat family protein (.1.2) Lus10041853 [exp] 68 / 8e-13 AT5G66055 465 / 2e-162 EMBRYO DEFECTIVE 2036, EMBRYO DEFECTIVE 16, ankyrin repeat protein (.1.2) Lus10032165 [exp] 64 / 9e-12 AT5G40160 293 / 3e-98 embryo defective 506, EMBRYO DEFECTIVE 139, Ankyrin repeat family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0465 [poplar] [flax] Ank PF12796 [poplar] [flax] Ank_2 Ankyrin repeats (3 copies)
Representative CDS sequence Show only first row Show all	>Potri.001G130500.1 pacid=42789232 polypeptide=Potri.001G130500.1.p locus=Potri.001G130500 ID=Potri.001G130500.1.v4.1 annot-version=v4.1 ATGGGTAGAGGCAGAGGAGGAGGAGGAGGAGGAGGAGACGCCGAGCTTCACGCGGCTTCGAGGTCAGGTGACATGAAAGCGATGGAGACAATTGTCAGCT CAAACCCTTTGGCTATTAACTCTAGAGATAAGCACTCTAGAACTCCATTGCATTTAGCTGCATGGTCTGGGCAGGCTGAGGCAGTGACTTATCTCTGCAA GCACAAGGCTGATGTTGGCGCTGCTGCCATGGATGACATGGGAGCAATTCACTTTGCTTCCCAAAAGGGTCATTTAGAAGTTGTCCGAACTCTGCTTTCA TCTGGGGCTTCCATCAAAGCTTCCACCAGAAAGGGCCTTACTCCGCTTCACTATGGTGTTCAAGGGTCCCATCTTGAGCTAGTCAAATACTTGGTAAAGA AAGGAGCAAGCCTTACTGTCAGGACAAAAGCAGGAATGACCCCTCTTGATCTTGCAACCAATGAAGAAATCCGCTTGTTTCTGGAAGAAAGTGAAAAGAC ATCGAAGAAAGAAACCCTGAATGGAAAAGACAAAGCTGAAGTATCTGAACCAAAGACATCATTGGAGGATAAATCAGAGTATTCTGGTGGTGAAGCTACT GCTGGGGAGCATGAAGAACAAGTGAATGAAAGTGTTAAGAGGAAGGGTGAAGCAGATGATACTAAGGAAACCTCGTCAGAACTGAAGAGAGCAAGAGTTG CACTCAATCATCTTCTGAGCGCAGACGACACTCAGGAAGAAGAAAACCTGTGA
AA sequence Show only first row Show all	>Potri.001G130500.1 pacid=42789232 polypeptide=Potri.001G130500.1.p locus=Potri.001G130500 ID=Potri.001G130500.1.v4.1 annot-version=v4.1 MGRGRGGGGGGGDAELHAASRSGDMKAMETIVSSNPLAINSRDKHSRTPLHLAAWSGQAEAVTYLCKHKADVGAAAMDDMGAIHFASQKGHLEVVRTLLS SGASIKASTRKGLTPLHYGVQGSHLELVKYLVKKGASLTVRTKAGMTPLDLATNEEIRLFLEESEKTSKKETLNGKDKAEVSEPKTSLEDKSEYSGGEAT AGEHEEQVNESVKRKGEADDTKETSSELKRARVALNHLLSADDTQEEENL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G19150			Ankyrin repeat family protein ...		Potri.001G130500 [exp]	0	1
AT5G25360			unknown protein		Potri.006G068600 [exp]	2.00	0.7297
AT2G25910			3'-5' exonuclease domain-conta...		Potri.018G058900 [exp]	3.16	0.7412
AT5G64010			unknown protein		Potri.005G064800 [exp]	4.47	0.6948
AT5G03415	E2F_DP	ATDPB, DPB	Transcription factor DP (.1.2)		Potri.016G093200 [exp]	7.74	0.6923
AT3G24200			FAD/NAD(P)-binding oxidoreduct...		Potri.001G051200 [exp]	7.93	0.6815
AT3G05675			BTB/POZ domain-containing prot...		Potri.006G202900 [exp]	14.69	0.6528
AT3G26420		ATRZ-1A	RZ-1A, RNA-binding (RRM/RBD/RN...		Potri.001G207100 [exp]	16.58	0.6319
AT4G20280		TAF11	TBP-associated factor 11 (.1)		Potri.003G157450 [exp]	16.61	0.6612
AT1G24120		ARL1	ARG1-like 1 (.1)		Potri.008G193500 [exp]	18.76	0.6824	ARL1.3
AT4G37740	GRF	ATGRF2	growth-regulating factor 2 (.1...		Potri.003G100800 [exp]	19.33	0.6726

Compare expression of checked genes

Potri.001G130500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.