Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G45410 337 / 9e-115 unknown protein AT4G25030 330 / 6e-112 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G042100 [exp] 368 / 1e-126 AT4G25030 355 / 1e-121 unknown protein Potri.010G219900 [exp] 361 / 3e-124 AT4G25030 355 / 5e-122 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033276 [exp] 416 / 2e-145 AT4G25030 348 / 4e-119 unknown protein Lus10034730 [exp] 392 / 1e-136 AT4G25030 336 / 6e-115 unknown protein Lus10036513 [exp] 344 / 2e-117 AT4G25030 413 / 8e-145 unknown protein Lus10036514 [exp] 336 / 3e-114 AT4G25030 420 / 1e-147 unknown protein Lus10041414 [exp] 333 / 3e-113 AT4G25030 424 / 4e-149 unknown protein Lus10041415 [exp] 327 / 6e-111 AT4G25030 408 / 5e-143 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.001G131300.3 pacid=42793476 polypeptide=Potri.001G131300.3.p locus=Potri.001G131300 ID=Potri.001G131300.3.v4.1 annot-version=v4.1 ATGGATTTTTTGCTTGAGGGAATAAATGAGGACACATCTGAATGCCATTTTGATGACAAGGACATTCAGAGATGCCCATTTTTGAGGAACATCAACAAGC CAACCAGCTTTTCGTTCTCTCCTGTGAATTTCCTTAATCCTGTACATGGAGCTAAAGGTCCAATTTTTGAAGATGGTCCGAATTTTGGTATGGCGTTTAA GCTCTTTCATGGCAAGGATGGGGTTGTCCCACTCTCAAATCAGTCCAGCTTTCATGATAACACTTTGGAACCTGAGCCTGCACCTCAATTCAATCCCTTA GCTGCAAAAGCTGCCACCATCAGTCTGTCCGCTTTTGGTCCTGGTGGACCATTTGGCTTTGGTTCCTTCAATGATAAGTGGAAGAATCAGAAAAAGAAAT CAGAATCAGCTAGCAAGAAAGAACCATCTTCTCAGAAAGGAAACACATCAAAACATGAGGCAATGGGAAACGAATGGTTGGAAACAGGCAACTGCCCCAT AGCCAAGTCCTACAGAGCTGTGAGCCGTGTACTCCCACTAGTAGCATCGACTCTTCAGCCACCCCCTAGCATGAAGCTTAGGTGTCCGCCTGCTATAGTT GCGGCAAGGGCTGCCCTAGCCCGGACTGCCCTTGTTAAAAACTTGAGACCTCAGCCACTACCTGCAAAGATGCTTGTCATTGCTCTGTTGGGCATGGCCG TGAATGTACCGTTGGGCATGTGGAAGGAACACACAGAGAAGTTCTCTCTTCAATGGTTTGCAGCTGTGCATGCAGCTGTGCCCTTCATAGCCATGCTAAG GAAGTCTGTCTTGATGCCAAAAACTGCCATGGCTCTGACCATTGGAGCTTCTATCCTAGGGCAGATTATCGGTTCTAGAGCTGAGAGGCACCGGTTGAAA ACTGGGGCTAGCAAGGAAAGGTTGAAAGTAAAAACAGCTATTGCTGCTGCCGTTGACAGATACAGCCCAAGCCAGGTCAGTGGCAATGCTGGCAGTAATT GTGGTACAGAGATGTCATGGGACCCTCTTCTTATTAAGGCTAGTGGAAGCAAATCATCTACCAGTGTTTGTTTCTAA
AA sequence Show only first row Show all	>Potri.001G131300.3 pacid=42793476 polypeptide=Potri.001G131300.3.p locus=Potri.001G131300 ID=Potri.001G131300.3.v4.1 annot-version=v4.1 MDFLLEGINEDTSECHFDDKDIQRCPFLRNINKPTSFSFSPVNFLNPVHGAKGPIFEDGPNFGMAFKLFHGKDGVVPLSNQSSFHDNTLEPEPAPQFNPL AAKAATISLSAFGPGGPFGFGSFNDKWKNQKKKSESASKKEPSSQKGNTSKHEAMGNEWLETGNCPIAKSYRAVSRVLPLVASTLQPPPSMKLRCPPAIV AARAALARTALVKNLRPQPLPAKMLVIALLGMAVNVPLGMWKEHTEKFSLQWFAAVHAAVPFIAMLRKSVLMPKTAMALTIGASILGQIIGSRAERHRLK TGASKERLKVKTAIAAAVDRYSPSQVSGNAGSNCGTEMSWDPLLIKASGSKSSTSVCF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G45410			unknown protein		Potri.001G131300 [exp]	0	1
AT4G23660		ATPPT1	polyprenyltransferase 1 (.1.2....		Potri.005G093600 [exp]	1.73	0.9191
AT1G27990			unknown protein		Potri.001G059500 [exp]	14.07	0.8821
AT3G06050		PRXIIF, ATPRXII...	peroxiredoxin IIF (.1)		Potri.019G024000 [exp]	17.94	0.8898	PtrcPrxIIF,Pt-PRX.1
AT2G43840		UGT74F1	UDP-glycosyltransferase 74 F1 ...		Potri.007G117200 [exp]	21.02	0.9036	Pt-ZOG1.9
AT2G24270		ALDH11A3	aldehyde dehydrogenase 11A3 (....		Potri.006G186800 [exp]	26.38	0.8989	Pt-ALDH11.2
AT1G07780		TRP6, PAI1	TRANSIENT RECEPTOR POTENTIAL 6...		Potri.012G145600 [exp]	36.20	0.8696
AT1G21790			TRAM, LAG1 and CLN8 (TLC) lipi...		Potri.002G083300 [exp]	42.14	0.8901
AT1G50320		ATHX, ATX	thioredoxin X (.1)		Potri.007G074000 [exp]	48.06	0.8920
AT5G07990		CYP75B1, D501, ...	TRANSPARENT TESTA 7, CYTOCHROM...		Potri.007G085000 [exp]	51.21	0.8773
AT3G53470			unknown protein		Potri.016G084000 [exp]	56.86	0.8906

Compare expression of checked genes

Potri.001G131300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.