Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G31850 1026 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) AT4G19120 1022 / 0 ERD3 early-responsive to dehydration 3, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT4G10440 537 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT1G33170 531 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT2G45750 526 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT4G00750 523 / 5e-180 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT1G26850 505 / 4e-173 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) AT4G18030 489 / 4e-167 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT2G43200 468 / 1e-158 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT4G00740 462 / 2e-156 QUA3 QUASIMODO 3, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G102400 [exp] 1161 / 0 AT1G31850 1036 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) Potri.015G139000 [exp] 553 / 0 AT2G45750 880 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.012G137300 [exp] 544 / 0 AT4G00750 874 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.002G154400 [exp] 538 / 0 AT4G00750 944 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.011G147600 [exp] 538 / 0 AT1G33170 984 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.001G454300 [exp] 531 / 0 AT1G33170 961 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.014G075700 [exp] 528 / 0 AT4G00750 955 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.001G146400 [exp] 519 / 1e-178 AT4G18030 1008 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.003G087600 [exp] 503 / 1e-172 AT4G18030 989 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034729 [exp] 1060 / 0 AT1G31850 991 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) Lus10033277 [exp] 1028 / 0 AT1G31850 965 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) Lus10005764 [exp] 535 / 0 AT2G45750 811 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10003014 [exp] 523 / 4e-180 AT4G18030 963 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10011045 [exp] 520 / 4e-179 AT4G18030 963 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10008298 [exp] 520 / 1e-178 AT4G10440 957 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10017357 [exp] 511 / 3e-175 AT1G33170 948 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10010152 [exp] 509 / 1e-174 AT1G33170 952 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10030479 [exp] 504 / 5e-173 AT1G26850 1057 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) Lus10012830 [exp] 504 / 7e-173 AT1G26850 1056 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF03141 [poplar] [flax] Methyltransf_29 Putative S-adenosyl-L-methionine-dependent methyltransferase
Representative CDS sequence Show only first row Show all	>Potri.001G131400.2 pacid=42787933 polypeptide=Potri.001G131400.2.p locus=Potri.001G131400 ID=Potri.001G131400.2.v4.1 annot-version=v4.1 ATGAAGCACAAAGATGGAAAACCTGTGTCTCATCCTGATAAAAATTCCAGGGCTGTTCCCATGGCAATAATGTTTTTTGTACTGTGCGGGTTTTCATTCT ATCTTGGTGGAATCTTCTGTTCTGAGAAAGATAAAATTGAGGCCAAGGACGTTGCAAAGGTGGTCTCCTCTCCCAAGGAATCGTCCATCGCTCCTCTCCA AATTAAATCCACTGCATTTCCTGAATGTAGCAGTGACTATCAAGACTACACTCCATGCACAGATCCAAAGAGGTGGAAGAAATATGGTAATCATCGGCTT ACTTTCATGGAACGCCACTGCCCTCCAGTTTTTGAAAGGAAGGAATGTTTAATTCCACCACCAGATGGGTATAAACCACCAATCAAATGGCCAAAGAGTA GAGATCAATGTTGGTACAGAAATGTACCGTATGATTGGATTAACAAGCAGAAATCTAATCAGAACTGGCTGAGAAAAGAGGGGGATAAGTTCCTCTTTCC TGGTGGGGGAACCATGTTTCCAAGAGGAGTGGGAGCCTATGTCGATTTGATGCAAGATCTTATCCCTGAAATGAAAGACGGAACCATTCGCACTGCCATT GATACTGGGTGTGGGGTTGCTAGCTGGGGAGGTGATCTATTGGATCGTGGGATTCTAACCGTTTCCCTTGCTCCGAGAGATAACCATGAGGCTCAAGTCC AGTTTGCATTAGAACGTGGAATTCCTGCAATTCTTGGCATCATTTCCACACAACGGCTTCCATTCCCATCGAATGCATTTGATATGGCTCATTGCTCCAG ATGTCTTATCCCATGGACAGAATTCGGTGGAATTTATCTTTTAGAAGTTCACCGTATACTCCGTCCTGGTGGCTTCTGGGTTCTGTCTGGTCCTCCTGTT AACTACGAAAACCGTTGGCGAGGCTGGAATACTACTGTCGAAGAGCAGAAATCAGATTATGAAAAGTTGCAAGAACTGCTGACTTCAATGTGCTTCAAAT TGTACGACAAAAAGGATGATATTGCTGTGTGGCAGAAAGCTTCTGATAATAGTTGCTATAGTAAGCTTGCTAATACTGATGCCTACCCACCCAAGTGTGA TGACAGTCTTGAGCCAGATTCAGCATGGTACACTCCAATCCGCCCTTGTGTTGTTGTTCCAAGCCCAAAAATCAAGAAATCAGTTATGGAGTCCATCCCC AAATGGCCAGAGAGGTTGCATGCTACACCTGAACGCATTTCAGATATTCCTGGTGGAAGTGCTAGTGCTTTTAAGCATGATGACAGCAAGTGGAAGATTC GTGCAAAGCACTACAAGAAGTTGCTGCCAGCACTTGGGTCTGATAAGATGAGAAATATAATGGACATGAATACAGTTTATGGGGGTTTTGCTGCGGCTGT GATTGATGATCCCCTGTGGGTCATGAATGTGGTCTCTTCCTATGCTGCCAACACTCTTCCTGTGGTTTTTGACCGTGGCCTCATCGGGACTTTTCATGAT TGGTGCGAAGCTTTCTCAACTTACCCTCGAACTTATGATCTCCTTCATCTTGATGGCCTCTTCACTGCAGAAAGCCATAGATGTGAAATGAAGTATGTGC TTTTGGAGATGGATCGAATCCTACGACCCACCGGTTATGCAATGATACGAGAATCCAGCTATTTCGTCGATGCCATTTCTACCATTGCCAAGGGTATGAG GTGGAGCTGCCGTAAAGAAGACACCGAATATGGAGTTGAGAAGGAGAAAATATTGATCTGCCAGAAGAAACTCTGGTACTCCTCAAAAAGTTCAAGGTGA
AA sequence Show only first row Show all	>Potri.001G131400.2 pacid=42787933 polypeptide=Potri.001G131400.2.p locus=Potri.001G131400 ID=Potri.001G131400.2.v4.1 annot-version=v4.1 MKHKDGKPVSHPDKNSRAVPMAIMFFVLCGFSFYLGGIFCSEKDKIEAKDVAKVVSSPKESSIAPLQIKSTAFPECSSDYQDYTPCTDPKRWKKYGNHRL TFMERHCPPVFERKECLIPPPDGYKPPIKWPKSRDQCWYRNVPYDWINKQKSNQNWLRKEGDKFLFPGGGTMFPRGVGAYVDLMQDLIPEMKDGTIRTAI DTGCGVASWGGDLLDRGILTVSLAPRDNHEAQVQFALERGIPAILGIISTQRLPFPSNAFDMAHCSRCLIPWTEFGGIYLLEVHRILRPGGFWVLSGPPV NYENRWRGWNTTVEEQKSDYEKLQELLTSMCFKLYDKKDDIAVWQKASDNSCYSKLANTDAYPPKCDDSLEPDSAWYTPIRPCVVVPSPKIKKSVMESIP KWPERLHATPERISDIPGGSASAFKHDDSKWKIRAKHYKKLLPALGSDKMRNIMDMNTVYGGFAAAVIDDPLWVMNVVSSYAANTLPVVFDRGLIGTFHD WCEAFSTYPRTYDLLHLDGLFTAESHRCEMKYVLLEMDRILRPTGYAMIRESSYFVDAISTIAKGMRWSCRKEDTEYGVEKEKILICQKKLWYSSKSSR

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G31850			S-adenosyl-L-methionine-depend...		Potri.001G131400 [exp]	0	1
AT3G51160		GMD2, MUR_1, MU...	MURUS 1, GDP-D-MANNOSE-4,6-DEH...		Potri.005G116200 [exp]	2.64	0.8790	GMD1.2
AT3G03050		RHD7, ATCSLD3, ...	ROOT HAIR DEFECTIVE 7, KOJAK, ...		Potri.013G082200 [exp]	5.19	0.8559	CESA3.1
AT5G45780			Leucine-rich repeat protein ki...		Potri.011G068700 [exp]	7.93	0.8404
AT4G31480			Coatomer, beta subunit (.1.2)		Potri.006G273300 [exp]	8.83	0.8574
AT4G27720			Major facilitator superfamily ...		Potri.012G020500 [exp]	22.58	0.7936
AT5G62890			Xanthine/uracil permease famil...		Potri.012G077400 [exp]	27.45	0.8207
AT3G53380			Concanavalin A-like lectin pro...		Potri.016G087800 [exp]	28.98	0.8196
AT1G53730		SRF6	STRUBBELIG-receptor family 6 (...		Potri.001G161600 [exp]	29.15	0.8090
AT1G75280			NmrA-like negative transcripti...		Potri.005G228700 [exp]	32.49	0.8331	PCBER7
AT2G19160			Core-2/I-branching beta-1,6-N-...		Potri.006G076600 [exp]	33.31	0.7980

Compare expression of checked genes

Potri.001G131400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.