Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G19100 154 / 1e-46 PAM68 photosynthesis affected mutant 68, Protein of unknown function (DUF3464) (.1) AT5G52780 68 / 5e-14 Protein of unknown function (DUF3464) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G072900 [exp] 65 / 8e-13 AT5G52780 101 / 2e-27 Protein of unknown function (DUF3464) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012152 [exp] 136 / 8e-40 AT4G19100 190 / 4e-61 photosynthesis affected mutant 68, Protein of unknown function (DUF3464) (.1) Lus10007593 [exp] 134 / 5e-36 AT1G31830 743 / 0.0 Amino acid permease family protein (.1.2) Lus10038849 [exp] 66 / 5e-13 AT5G52780 131 / 2e-38 Protein of unknown function (DUF3464) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF11947 [poplar] [flax] DUF3464 Photosynthesis affected mutant 68
Representative CDS sequence Show only first row Show all	>Potri.001G132001.1 pacid=42790315 polypeptide=Potri.001G132001.1.p locus=Potri.001G132001 ID=Potri.001G132001.1.v4.1 annot-version=v4.1 ATGGCTGAAATAGCAGCTGGAGTAGTGAGACTATCATCGTCAACATCACCATTTTCTTGGCCTTACAAGCTCTCTTCAACATCTCTTTTTTCCAAGATCG ATCGTATTTGTGAACGAGCCTCAAACTCCCCTTCTTCGCTTGTTCCAGCCAAACAAACCTTGCGATTTCCAGTTCCCATACCAGGTTTTTTCCAAAATCA ATCTCGCTTGTCACATCCCTCATCCCTATATGCAACCTTGAATAGCCCAAGAGGCTTTGGTCAACCTCCGAAGAGAAGCAAAAAGACCAAGAAATCAAAG CCAGGCAATGATGAAGATGACGACGACGAAGACGAGGAGGAGGAGCAAGAAGAACCAGATGCCGGGGTAATACCCGAAGTAGTGACTAACAGGATGATGA CCAGGATGGGAATCTCGGTGGGGGCTCCCTTGTTTGTTGGAGTGTTGTTCTTCCCATTCTTCTACTATCTCAAAGTTGGTTTGAAGATTGATGTGCCTAC ATGGGTGCCTTTTATTGTGTCCTTCATCTTCTTCGGGTCTGCCTTACTAGGTGTGAGTTATGGCATTGTGTCCTCCAGCTGGGATCCAAAGAGAGAAGGA TCATTTTGGGGTTGGAACGAGGCTCAGAAGAACTGGCCTGTTTTTTGGCAGTCTCTACGGGGGAGACCTGGCAAGCAGTAG
AA sequence Show only first row Show all	>Potri.001G132001.1 pacid=42790315 polypeptide=Potri.001G132001.1.p locus=Potri.001G132001 ID=Potri.001G132001.1.v4.1 annot-version=v4.1 MAEIAAGVVRLSSSTSPFSWPYKLSSTSLFSKIDRICERASNSPSSLVPAKQTLRFPVPIPGFFQNQSRLSHPSSLYATLNSPRGFGQPPKRSKKTKKSK PGNDEDDDDEDEEEEQEEPDAGVIPEVVTNRMMTRMGISVGAPLFVGVLFFPFFYYLKVGLKIDVPTWVPFIVSFIFFGSALLGVSYGIVSSSWDPKREG SFWGWNEAQKNWPVFWQSLRGRPGKQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G19100		PAM68	photosynthesis affected mutant...		Potri.001G132001 [exp]	0	1
AT5G39210		CRR7	chlororespiratory reduction 7 ...		Potri.004G120300 [exp]	1.00	0.9917
AT1G32990		PRPL11	plastid ribosomal protein l11 ...		Potri.001G450800 [exp]	3.46	0.9867
AT4G18370		DEGP5, DEG5, HH...	PROTEASE HHOA PRECUSOR, DEGP p...		Potri.011G083300 [exp]	4.24	0.9845	Pt-HHOA.1
AT3G13120			Ribosomal protein S10p/S20e fa...		Potri.011G092800 [exp]	4.58	0.9871
AT4G14540	CCAAT	NF-YB3	"nuclear factor Y, subunit B3"...		Potri.006G005500 [exp]	4.89	0.9821
AT3G26900		ATSKL1	Arabidopsis thaliana shikimate...		Potri.017G062800 [exp]	5.91	0.9840	SK1
AT4G03520		ATHM2	Thioredoxin superfamily protei...		Potri.005G058400 [exp]	6.00	0.9831	PtrTrxm3
AT3G09210		PTAC13	plastid transcriptionally acti...		Potri.006G094800 [exp]	6.32	0.9853
AT4G29060		EMB2726	embryo defective 2726, elongat...		Potri.018G083900 [exp]	6.32	0.9828
AT1G14150		PnsL2, PQL2, PQ...	PsbQ-like 1, Photosynthetic ND...		Potri.010G166800 [exp]	6.48	0.9810

Compare expression of checked genes

Potri.001G132001 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.