Plant FIBer expression Database

Potri.001G132166 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.019G021200
[exp]
56 / 2e-10 AT1G12700 491 / 2e-166 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1)
Potri.006G271400
[exp]
45 / 1e-06 AT1G12700 486 / 3e-164 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1)
Potri.006G257300
[exp]
44 / 4e-06 AT1G62930 481 / 3e-163 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.001G132166.1 pacid=42789266 polypeptide=Potri.001G132166.1.p locus=Potri.001G132166 ID=Potri.001G132166.1.v4.1 annot-version=v4.1
ATGGAGTTGGAGTGGTCTGTAGACAAGGGTGATGAAGTGGTTGGAGAGAGTAGAATCATACCCATTATTTTCATTTGGCATCGTTGGAAAAAAAAGGTTT
CAGAATCTCATCGTCTGTGTTTTTCCTTCTCTTTGTGGTCTGGTTTTTTATTGACCAGAACGACAAATACACTTTGTGACAAATATGGAATTGGTGAAGC
TGGAGCGTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCACACACACACACACACACACAAGGAAAGCAGAAGTCTTGGGAAGATAACTGGGTGGGAA
TGA
AA sequence
>Potri.001G132166.1 pacid=42789266 polypeptide=Potri.001G132166.1.p locus=Potri.001G132166 ID=Potri.001G132166.1.v4.1 annot-version=v4.1
MELEWSVDKGDEVVGESRIIPIIFIWHRWKKKVSESHRLCFSFSLWSGFLLTRTTNTLCDKYGIGEAGASLSLSLSLSLSHTHTHTHKESRSLGKITGWE

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.001G132166
[exp]
0 1
Potri.011G012201
[exp]
17.34 0.8490
AT1G17285 unknown protein Potri.001G162300
[exp]
23.02 0.8695
AT5G09500 Ribosomal protein S19 family p... Potri.004G074201
[exp]
25.57 0.8232
AT4G31830 unknown protein Potri.018G106300
[exp]
28.46 0.8707
AT2G39840 TOPP4 type one serine/threonine prot... Potri.010G072101
[exp]
31.68 0.7912
AT1G10930 ATSGS1, RECQL4A... DNA helicase (RECQl4A) (.1) Potri.003G015800
[exp]
34.85 0.8659
AT3G07060 EMB1974 embryo defective 1974, NHL dom... Potri.002G241366
[exp]
40.39 0.8277
AT4G02550 unknown protein Potri.010G215600
[exp]
46.86 0.8643
AT5G17680 disease resistance protein (TI... Potri.013G097000
[exp]
56.49 0.8575
AT1G17960 Threonyl-tRNA synthetase (.1) Potri.010G096550
[exp]
70.58 0.8278

Potri.001G132166 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.