Plant FIBer expression Database

Potri.001G132232 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.001G132232.1 pacid=42789558 polypeptide=Potri.001G132232.1.p locus=Potri.001G132232 ID=Potri.001G132232.1.v4.1 annot-version=v4.1
ATGAAGAAAAAAATGAGAAGTCGAAAATCGCCATTGCCTATGGCATCGCCACCATCTCCATCGCCGCCAAAATCTAGCATTCTCAACAGCAACAAGAAAA
AGAAGCCGATCGCATCTGTTGCTGCCGCCGCTGGTGTTTTGAGATCATCACCACCGCCGTCTCTTGATAAAACCCTAGCTTCAATCTCCGATCTCAAGGA
GTTAGCCTCTTCTCGCTTCGACGATATCAAGAGCCGTCTCATCGATCGCTCTCACTCTGAGATCATCAAAGATCTCGAAGCCTCTCACTCTCGTCTCCAC
AAACACTTCAAGATTCAGAGCCAAACATGCCAGCAGATGATGGATGAATCGGAGAAGGATTTTAAGAAGATGACTGAACGGGTTACTGAAACCACCGAAG
CAATGAAGGAGACATACACAGAGTTCATGGCAGAAGCACAAGCCACCGCATCTCGTGTGTGCAAAACCACAATCCCTGAGCTTGCAAAGTCCTTGGAGAA
ATCCATTGGTGATCTCCAAAGCCGCTTCGGTATTCCATCAAATTGA
AA sequence
>Potri.001G132232.1 pacid=42789558 polypeptide=Potri.001G132232.1.p locus=Potri.001G132232 ID=Potri.001G132232.1.v4.1 annot-version=v4.1
MKKKMRSRKSPLPMASPPSPSPPKSSILNSNKKKKPIASVAAAAGVLRSSPPPSLDKTLASISDLKELASSRFDDIKSRLIDRSHSEIIKDLEASHSRLH
KHFKIQSQTCQQMMDESEKDFKKMTERVTETTEAMKETYTEFMAEAQATASRVCKTTIPELAKSLEKSIGDLQSRFGIPSN

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.001G132232
[exp]
0 1
AT1G20160 ATSBT5.2 Subtilisin-like serine endopep... Potri.003G189200
[exp]
9.38 0.6609
Potri.016G013000
[exp]
9.79 0.6823
AT1G46264 HSF SCZ, AT-HSFB4 SCHIZORIZA, heat shock transcr... Potri.009G068000
[exp]
20.59 0.6778
AT1G11580 ATPMEPCRA methylesterase PCR A (.1) Potri.011G135000
[exp]
22.31 0.6692
AT5G28150 Plant protein of unknown funct... Potri.005G050900
[exp]
26.32 0.6805
AT3G16300 Uncharacterised protein family... Potri.003G050400
[exp]
32.74 0.6655
AT1G79860 ATROPGEF12, ROP... MATERNAL EFFECT EMBRYO ARREST ... Potri.001G183800
[exp]
42.57 0.6687
AT4G18260 Cytochrome b561/ferric reducta... Potri.011G080400
[exp]
45.16 0.6608
AT5G01020 Protein kinase superfamily pro... Potri.016G143200
[exp]
53.60 0.6491
AT3G24060 Plant self-incompatibility pro... Potri.001G053200
[exp]
71.43 0.6343

Potri.001G132232 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.