Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G19045 430 / 7e-156 Mob1/phocein family protein (.1) AT5G45550 428 / 4e-155 MOB1-like MOB1-like, Mob1/phocein family protein (.1) AT5G20440 256 / 7e-87 Mob1/phocein family protein (.1) AT5G20430 171 / 7e-55 Mob1/phocein family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G142500 [exp] 395 / 4e-142 AT5G45550 399 / 2e-143 MOB1-like, Mob1/phocein family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012150 [exp] 402 / 1e-144 AT5G45550 399 / 2e-143 MOB1-like, Mob1/phocein family protein (.1) Lus10007595 [exp] 399 / 1e-143 AT5G45550 394 / 1e-141 MOB1-like, Mob1/phocein family protein (.1) Lus10017172 [exp] 389 / 3e-139 AT5G45550 396 / 6e-142 MOB1-like, Mob1/phocein family protein (.1) Lus10021556 [exp] 387 / 7e-139 AT5G45550 394 / 1e-141 MOB1-like, Mob1/phocein family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03637 [poplar] [flax] Mob1_phocein Mob1/phocein family
Representative CDS sequence Show only first row Show all	>Potri.001G132700.1 pacid=42789132 polypeptide=Potri.001G132700.1.p locus=Potri.001G132700 ID=Potri.001G132700.1.v4.1 annot-version=v4.1 ATGAGCAGTCTCTTTGGTTTGGGCAGAAATCAAAGGACATTCCGCCCAAAGAAGAGTGCACCATCAGGGAGTAAGGGTGCGCAACTTAGAAAGCACATTG ATGCGACCTTGGGCAGTGGAAACCTGAGGGAAGCAGTAAGACTTCCTCCTGGAGAGGATTTGAATGAATGGCTTGCTGTCAACACTGTGGATTTCTTCAA CCAAGTGAATCTTCTCTTTGGTACCCTCACAGAGTTCTGTACTCCTGAGAACTGTTCTACTATGAGTGCAGGCCCCAAGTATGAGTATAGATGGGCCGAT GGGGTACAGATCAAGAAACCTATTGAGGTTTCTGCTCCAAAATATGTTGAATATTTAATGGACTGGATTGAAGCTCAGCTTGACGATGAATCCATATTTC CTCAAAGACTTGGTGCACCATTTCCTCCCAACTTCAAGGAGGTTGTTAAGACGATCTTCAAACGACTATTCCGTGTATATGCCCATATTTATCACTCTCA TTTTCAGAAAATTGTGAGCCTCAAAGAGGAAGCCCATCTGAACACGTGCTTCAAGCATTTCATCCTATTTACCCATGAATTTGGGCTAATAGACAAGAAG GAGCTTGCTCCCCTTCAAGAGCTTATAGAATCCATTATCGTTCCGTACTAA
AA sequence Show only first row Show all	>Potri.001G132700.1 pacid=42789132 polypeptide=Potri.001G132700.1.p locus=Potri.001G132700 ID=Potri.001G132700.1.v4.1 annot-version=v4.1 MSSLFGLGRNQRTFRPKKSAPSGSKGAQLRKHIDATLGSGNLREAVRLPPGEDLNEWLAVNTVDFFNQVNLLFGTLTEFCTPENCSTMSAGPKYEYRWAD GVQIKKPIEVSAPKYVEYLMDWIEAQLDDESIFPQRLGAPFPPNFKEVVKTIFKRLFRVYAHIYHSHFQKIVSLKEEAHLNTCFKHFILFTHEFGLIDKK ELAPLQELIESIIVPY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G19045			Mob1/phocein family protein (....		Potri.001G132700 [exp]	0	1
AT1G10200	LIM	WLIM1, SF3	WLIM1, GATA type zinc finger t...		Potri.001G292900 [exp]	1.00	0.9236
AT3G27890		NQR	NADPH:quinone oxidoreductase (...		Potri.001G028000 [exp]	2.00	0.9209	Pt-NQR.2
AT4G33140			Haloacid dehalogenase-like hyd...		Potri.006G216500 [exp]	4.00	0.9139
AT1G10200	LIM	WLIM1, SF3	WLIM1, GATA type zinc finger t...		Potri.009G087200 [exp]	4.89	0.9187
AT4G16444			unknown protein		Potri.005G101300 [exp]	8.24	0.8696
AT3G54950		pPLAIIIbeta, PL...	patatin-related phospholipase ...		Potri.012G123900 [exp]	8.48	0.8869
AT5G27000		KATD, ATK4	KINESIN-LIKE PROTEIN IN ARABID...		Potri.013G011500 [exp]	10.39	0.8958
AT3G25855			Copper transport protein famil...		Potri.008G119200 [exp]	10.44	0.8069
AT1G62040		ATG8C	autophagy 8c, Ubiquitin-like s...		Potri.004G013700 [exp]	11.48	0.8782
AT4G30010			unknown protein		Potri.018G142500 [exp]	11.95	0.8823

Compare expression of checked genes

Potri.001G132700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.