Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G19040 1158 / 0 EDR2 ENHANCED DISEASE RESISTANCE 2 (.1.2.3) AT5G45560 1148 / 0 Pleckstrin homology (PH) domain-containing protein / lipid-binding START domain-containing protein (.1) AT2G28320 382 / 6e-122 Pleckstrin homology (PH) and lipid-binding START domains-containing protein (.1) AT3G54800 366 / 3e-116 Pleckstrin homology (PH) and lipid-binding START domains-containing protein (.1), Pleckstrin homology (PH) and lipid-binding START domains-containing protein (.2) AT5G35180 306 / 9e-93 Protein of unknown function (DUF1336) (.1), Protein of unknown function (DUF1336) (.2), Protein of unknown function (DUF1336) (.3), Protein of unknown function (DUF1336) (.4) AT5G10750 214 / 2e-63 Protein of unknown function (DUF1336) (.1) AT5G24990 187 / 1e-53 Protein of unknown function (DUF1336) (.1) AT5G25010 181 / 1e-51 Protein of unknown function (DUF1336) (.1) AT1G06050 181 / 2e-51 Protein of unknown function (DUF1336) (.1) AT5G25020 148 / 7e-40 Protein of unknown function (DUF1336) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G100600 [exp] 1301 / 0 AT4G19040 1182 / 0.0 ENHANCED DISEASE RESISTANCE 2 (.1.2.3) Potri.008G213000 [exp] 1052 / 0 AT4G19040 1017 / 0.0 ENHANCED DISEASE RESISTANCE 2 (.1.2.3) Potri.009G011200 [exp] 395 / 4e-127 AT2G28320 1071 / 0.0 Pleckstrin homology (PH) and lipid-binding START domains-containing protein (.1) Potri.008G038800 [exp] 366 / 4e-116 AT3G54800 922 / 0.0 Pleckstrin homology (PH) and lipid-binding START domains-containing protein (.1), Pleckstrin homology (PH) and lipid-binding START domains-containing protein (.2) Potri.018G113100 [exp] 311 / 5e-95 AT5G35180 1028 / 0.0 Protein of unknown function (DUF1336) (.1), Protein of unknown function (DUF1336) (.2), Protein of unknown function (DUF1336) (.3), Protein of unknown function (DUF1336) (.4) Potri.018G014234 [exp] 195 / 2e-56 AT5G10750 428 / 5e-152 Protein of unknown function (DUF1336) (.1) Potri.010G223400 [exp] 201 / 3e-55 AT3G54800 922 / 0.0 Pleckstrin homology (PH) and lipid-binding START domains-containing protein (.1), Pleckstrin homology (PH) and lipid-binding START domains-containing protein (.2) Potri.017G027700 [exp] 173 / 3e-48 AT1G06050 399 / 4e-140 Protein of unknown function (DUF1336) (.1) Potri.007G130400 [exp] 171 / 1e-47 AT1G06050 390 / 1e-136 Protein of unknown function (DUF1336) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012149 [exp] 1233 / 0 AT4G19040 1227 / 0.0 ENHANCED DISEASE RESISTANCE 2 (.1.2.3) Lus10007596 [exp] 1226 / 0 AT4G19040 1217 / 0.0 ENHANCED DISEASE RESISTANCE 2 (.1.2.3) Lus10040015 [exp] 323 / 2e-99 AT5G35180 1034 / 0.0 Protein of unknown function (DUF1336) (.1), Protein of unknown function (DUF1336) (.2), Protein of unknown function (DUF1336) (.3), Protein of unknown function (DUF1336) (.4) Lus10019591 [exp] 276 / 5e-82 AT5G35180 931 / 0.0 Protein of unknown function (DUF1336) (.1), Protein of unknown function (DUF1336) (.2), Protein of unknown function (DUF1336) (.3), Protein of unknown function (DUF1336) (.4) Lus10040011 [exp] 240 / 1e-68 AT5G35180 820 / 0.0 Protein of unknown function (DUF1336) (.1), Protein of unknown function (DUF1336) (.2), Protein of unknown function (DUF1336) (.3), Protein of unknown function (DUF1336) (.4) Lus10019068 [exp] 226 / 3e-65 AT5G35180 589 / 0.0 Protein of unknown function (DUF1336) (.1), Protein of unknown function (DUF1336) (.2), Protein of unknown function (DUF1336) (.3), Protein of unknown function (DUF1336) (.4) Lus10016094 [exp] 227 / 6e-64 AT2G28320 979 / 0.0 Pleckstrin homology (PH) and lipid-binding START domains-containing protein (.1) Lus10021465 [exp] 226 / 8e-64 AT2G28320 1056 / 0.0 Pleckstrin homology (PH) and lipid-binding START domains-containing protein (.1) Lus10042428 [exp] 192 / 2e-55 AT5G10750 444 / 6e-158 Protein of unknown function (DUF1336) (.1) Lus10026242 [exp] 186 / 9e-53 AT5G10750 440 / 1e-156 Protein of unknown function (DUF1336) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0209 [poplar] [flax] Bet_v_1_like PF01852 [poplar] [flax] START START domain CL0209 [poplar] [flax] PF07059 [poplar] [flax] DUF1336 Protein of unknown function (DUF1336)
Representative CDS sequence Show only first row Show all	>Potri.001G132900.1 pacid=42790430 polypeptide=Potri.001G132900.1.p locus=Potri.001G132900 ID=Potri.001G132900.1.v4.1 annot-version=v4.1 ATGTCGAAAGTGATATTCGAAGGGTGGATGGTGAGGTATGGAAGGAGGAAGATCGGGAGATCGTTTATTCACATGAGGTATTTCGTTTTGGAGCCTACGC TTCTCGCTTATTACAAGAAGAAACCGGAAGATAATCAGGTACCAATCAAAACCTTGTTGATTGATGGGAATTGTCGAGTAGAGGATCGAGGCCTGAAGAC TCAGCATGGACATATGGTTTATGTTCTATCTGTTTATAACAAGAAAGACAAGTATAATCGAATCACAATGGCAGCATTTAACATCCAGGAACAATTGATG TGGAAGGGAAAAATTGAATTTGTAATTGATCAGCATCAGGAGTCCCAAGTTCCCAATGGTAACAAATATGCCTCATTCGAATACAAATCTGGGATGGATA ATGGGAGGACTGCTTCTTCATCAGATTGTGAAATTCAGTTCATTGCACAGGAGGATGAAGATGAAAGTCATACAAATTTGTTGCGGAGAACAACCATTGG AAATGGTCCACCTGCCTCAGTATTTGACTGGACACAAGAATTCGATTCAGATTTGACAAACCAGAATGCCAACAACCAAGCATTCTCCAGAAAGCATTGG CGCCTTTTACAGTGTCAAAATGGACTCCGCATTTTTGAAGAGCTGCTTGAAGTCGAGTACCTTCCAAGGAGCTGTAGTCGAGCAATGAAGGCTGTAGGTG TTGTTGAGGCTAGCTGTGAAGAAATATTTGAACTTATAATGAGCATGGATGCTAAACGGTTTGAGTGGGATTGCAGCTTCCAGCATGGTAGTTTAGTTGA AGAGGTGGATGGACATACAGCAATTCTCTATCATAGACTTCAGCTGGACTGGTTTCCTATATTTGTGTGGCCGCGTGACCTTTGCTACGTGAGATATTGG CGGCGAAATGATGATGGTAGCTATGTTGTGCTATTTCGTTCTAGAGTGCATGAGAAATGTGATCCACAACCAGGTTATGTGCGGGCCAATATCGAGAGTG GAGGTTTCATTATTTCCCCTTTGAAACCTTGTAATGAGAAACCCAGAACACAGGTGCAGCACCTTATGCAGATTGATCTAAAAGGATGGGGTGTGGGTTA TGTTTCATCATTTCAGCAACATTGTCTTCTTCAGATGTTAAATAGTGTTGCTGGGCTACGTGAATTGTTTTCCCAAACAGATGAGAGAGGTGCCCCTCCA AGAATTGCTGTTATGGCCAATATGGCATCAGCTTCTGCTCCATCAAAGAAAAATGTAAAGGTGCCAGAATCTTCTGTTCATCCTACTCCACCTTCTCTCG ATCAGATAAATGCTGCTAGCAGACACTCTGTAATGGACGAAGACACCGATGATGATGAAGAATTTCCAATAGCTGAAGAAGAACAAGAGGCTTTCCGAGC CAAGCATGAGAATGATGCAAAGAGAACAGCCTTGGAAGAAGAATCAGTTGATCAAATCGATTTATCCTGTTTTTCGGGTAATCTACGCCGTGATGACCGT GACAATGCCCGTGACTGCTGGCGAATATCTGATGGAAACAACTTCAGAGTTCGTAGCAAGCGATTTTGTTTTGACAAATCAAAGGTCCCCGCAGGAAAAC ATTTAATGGATCTTGTTGCTGTTGATTGGTTCAAAGATACAAAAAGAATGGATCATGTTGCCAGGCGTCAAGGATGTGCTGCACAGGTTGCTTCAGAGAA AGGGCATTTCTCTGTGGTTTTTAATCTGCAAGTTCCTGGTTCAACACACTACAGTATGGTATTTTATTTCGTGACAAAGGAATTAGTACCTGGATCTCTC TTGCAACGGTTTGTTGATGGTGACGACGAATTCCGCAACAGTAGGTTTAAGCTTATTCCATCAGTTCCCAAGGGTTCATGGATTGTGCGGCAGAGTGTTG GAAGCACCCCGTGCTTATTGGGAAAAGCAGTTGATTGCAACTATATCCGTGGTCCTAAGTACCTAGAGGTTGATGTTGATATTGGTTCTTCTACTGTTGC AAATGGAGTCTTGGGACTTGTAATTGGTGTAATTACAACATTGGTGGTTGACATGGCTTTCCTTGTACAGGCAAATACTACAGAAGAGTTGCCAGAGAGG TTGATAGGTGCCGTCCGTGTTTCTCATATAGAGCTCTCATCTGCTATCGTTCCTAAACTGGATCCAGATCCCTCGTGA
AA sequence Show only first row Show all	>Potri.001G132900.1 pacid=42790430 polypeptide=Potri.001G132900.1.p locus=Potri.001G132900 ID=Potri.001G132900.1.v4.1 annot-version=v4.1 MSKVIFEGWMVRYGRRKIGRSFIHMRYFVLEPTLLAYYKKKPEDNQVPIKTLLIDGNCRVEDRGLKTQHGHMVYVLSVYNKKDKYNRITMAAFNIQEQLM WKGKIEFVIDQHQESQVPNGNKYASFEYKSGMDNGRTASSSDCEIQFIAQEDEDESHTNLLRRTTIGNGPPASVFDWTQEFDSDLTNQNANNQAFSRKHW RLLQCQNGLRIFEELLEVEYLPRSCSRAMKAVGVVEASCEEIFELIMSMDAKRFEWDCSFQHGSLVEEVDGHTAILYHRLQLDWFPIFVWPRDLCYVRYW RRNDDGSYVVLFRSRVHEKCDPQPGYVRANIESGGFIISPLKPCNEKPRTQVQHLMQIDLKGWGVGYVSSFQQHCLLQMLNSVAGLRELFSQTDERGAPP RIAVMANMASASAPSKKNVKVPESSVHPTPPSLDQINAASRHSVMDEDTDDDEEFPIAEEEQEAFRAKHENDAKRTALEEESVDQIDLSCFSGNLRRDDR DNARDCWRISDGNNFRVRSKRFCFDKSKVPAGKHLMDLVAVDWFKDTKRMDHVARRQGCAAQVASEKGHFSVVFNLQVPGSTHYSMVFYFVTKELVPGSL LQRFVDGDDEFRNSRFKLIPSVPKGSWIVRQSVGSTPCLLGKAVDCNYIRGPKYLEVDVDIGSSTVANGVLGLVIGVITTLVVDMAFLVQANTTEELPER LIGAVRVSHIELSSAIVPKLDPDPS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G19040		EDR2	ENHANCED DISEASE RESISTANCE 2 ...		Potri.001G132900 [exp]	0	1
AT1G75170			Sec14p-like phosphatidylinosit...		Potri.007G025800 [exp]	4.35	0.8594
AT3G18850		LPAT5	lysophosphatidyl acyltransfera...		Potri.009G112307 [exp]	4.89	0.9003
AT2G17530			Protein kinase superfamily pro...		Potri.007G063100 [exp]	7.07	0.8515
AT3G55990		TBL29, ESK1	TRICHOME BIREFRINGENCE-LIKE 29...		Potri.008G070200 [exp]	7.21	0.8912
AT5G61840		GUT1, IRX10-L	Exostosin family protein (.1)		Potri.012G109200 [exp]	9.74	0.8905
AT1G47480			alpha/beta-Hydrolases superfam...		Potri.004G143200 [exp]	13.26	0.8695
AT5G41990		EIP1, ATWNK8, W...	EMF1-Interacting Protein 1, wi...		Potri.003G145300 [exp]	22.51	0.8940	WNK8.3
AT1G77610			EamA-like transporter family p...		Potri.002G084500 [exp]	22.95	0.8610
AT1G15240			Phox-associated domain;Phox-li...		Potri.003G053200 [exp]	23.36	0.8415
AT1G77410		BGAL16	beta-galactosidase 16 (.1)		Potri.002G080700 [exp]	24.24	0.8852

Compare expression of checked genes

Potri.001G132900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.