Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G15490 165 / 4e-45 UGT73B4 UDP-glycosyltransferase 73B4 (.1.2.3) AT2G36780 164 / 2e-44 UDP-Glycosyltransferase superfamily protein (.1) AT4G34135 163 / 3e-44 UGT73B2 UDP-glucosyltransferase 73B2 (.1.2) AT2G15480 157 / 3e-42 UGT73B5 UDP-glucosyl transferase 73B5 (.1.2) AT2G36760 156 / 8e-42 UGT73C2 UDP-glucosyl transferase 73C2 (.1) AT2G36750 155 / 2e-41 UGT73C1, UGT72C1 UDP-glucosyl transferase 73C1 (.1) AT4G34138 155 / 3e-41 UGT73B1 UDP-glucosyl transferase 73B1 (.1) AT2G36770 152 / 2e-40 UDP-Glycosyltransferase superfamily protein (.1) AT4G34131 152 / 2e-40 UGT73B3 UDP-glucosyl transferase 73B3 (.1) AT2G36790 150 / 2e-39 UGT73C6 UDP-glucosyl transferase 73C6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G100500 [exp] 451 / 3e-154 AT2G36780 161 / 2e-43 UDP-Glycosyltransferase superfamily protein (.1) Potri.001G133100 [exp] 251 / 4e-78 AT3G53160 159 / 2e-43 UDP-glucosyl transferase 73C7 (.1) Potri.017G077500 [exp] 166 / 2e-45 AT5G12890 389 / 9e-131 UDP-Glycosyltransferase superfamily protein (.1) Potri.017G077800 [exp] 161 / 2e-43 AT5G12890 387 / 3e-130 UDP-Glycosyltransferase superfamily protein (.1) Potri.017G077400 [exp] 161 / 2e-43 AT5G12890 381 / 1e-127 UDP-Glycosyltransferase superfamily protein (.1) Potri.003G210400 [exp] 158 / 2e-42 AT5G12890 525 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Potri.016G097400 [exp] 157 / 8e-42 AT3G53150 626 / 0.0 UDP-glucosyl transferase 73D1 (.1) Potri.009G099032 [exp] 155 / 1e-41 AT2G15490 558 / 0.0 UDP-glycosyltransferase 73B4 (.1.2.3) Potri.006G120600 [exp] 155 / 2e-41 AT3G53150 617 / 0.0 UDP-glucosyl transferase 73D1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007597 [exp] 335 / 2e-109 AT2G36780 168 / 4e-46 UDP-Glycosyltransferase superfamily protein (.1) Lus10012148 [exp] 322 / 2e-104 AT2G36780 169 / 1e-46 UDP-Glycosyltransferase superfamily protein (.1) Lus10025513 [exp] 155 / 2e-41 AT5G12890 348 / 9e-115 UDP-Glycosyltransferase superfamily protein (.1) Lus10014082 [exp] 153 / 8e-41 AT2G15480 483 / 3e-168 UDP-glucosyl transferase 73B5 (.1.2) Lus10014437 [exp] 153 / 2e-40 AT2G36780 545 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Lus10014079 [exp] 150 / 1e-39 AT4G34131 483 / 3e-168 UDP-glucosyl transferase 73B3 (.1) Lus10019835 [exp] 150 / 1e-39 AT2G15480 476 / 3e-165 UDP-glucosyl transferase 73B5 (.1.2) Lus10014404 [exp] 150 / 2e-39 AT2G36760 507 / 4e-177 UDP-glucosyl transferase 73C2 (.1) Lus10019833 [exp] 149 / 2e-39 AT2G15480 483 / 2e-168 UDP-glucosyl transferase 73B5 (.1.2) Lus10019831 [exp] 149 / 2e-39 AT2G15490 425 / 8e-146 UDP-glycosyltransferase 73B4 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [poplar] [flax] GT-B PF00201 [poplar] [flax] UDPGT UDP-glucoronosyl and UDP-glucosyl transferase
Representative CDS sequence Show only first row Show all	>Potri.001G133000.3 pacid=42789207 polypeptide=Potri.001G133000.3.p locus=Potri.001G133000 ID=Potri.001G133000.3.v4.1 annot-version=v4.1 ATGACTCAAGAGATATGGGTTGTTCCATTTTTTGGGCAGGGCCATCTCCTACCAAGTATGGAACTTTGCAAACACGTGGCATCAAGAAACTTCAGAACCA CCCTTATCATTCCCTCTAACTTCTCCTCCGCTGTCCCCTCCTCTATTCACCAATATCCACTTCTTGAAATAGCTGAATTACCCTCTTCTCCACCACCTTT GCAGCAGCATCCAGGACCCGACCCGCTTCTCCCTCCCCATAAGCATGACAACCAGATGGCACAAAGCCTTGAAAACCTCATTTCAACCCGATCACTGAAC CCGGTGTCAAGACAACCCGCTTGTGTTATTGTTGATGTTATGATGAGCTGGACTGCTGAAGTATTTGCAAAGTTTGAGGTTCCAACCATTGGGTTTTTCA CATCTGGTGCGTGCTCGGCAGCCATGGAGTATGCCATGTGGAAGGCCCACCTGGATGACTTGAAGCCTGGGGAGATCCGTTTACTTCAAGGTTTACCGGA GGAAATGGCTCTTACACACTCCGACCTTAAAAGTAGGCCCCACCGACCTCCGGGTGGTAGAGGAGGTCCACCTGGCTTGGGCGGACCACCCGGTCCAATG GGCGGACCACCCGGTCCCATGGGTGGTTTTCCTGGACCACCAGGTGATGTGGGCCCATCTAAAATGATGGGTCCACCGAAACCCGGTGCACCACCACCAT GGTTGGAGGAAGTGAAGGGCTCGATTGCATATATGATCAATACATGCGATGATCTTGAGCATCCATTTATTCAGTATCTAGTTGATCAAGTTAAGAAACC AGTTTGGGATATTGGTCCATTATTACCCGAGCTATATTGGAAATCGGCTGGTTCACTTCTTCATGACCATGAAATTCGAACCAGCCGGGGGTCTAATGTC ACCGAAGAGGAAGTGATAGCATGGTTGGATTCAAAACCACCTGGTTCGGCAGTATATGTGTCATTCGGTAGTGAAGTGGGTCTTGAAATGGAGGAGAATC GGCATTTGGCAAACGCACTGGAAGCATTAAACCGGCCATTTATTTGGGTGATCCAACCTGGTTCGGGCAGACCAGGTCCACCACCGGGATTACCTAGTGC TGATACTGAAGAAGATTATTTTCCTCATGATCTAGACAAAAGAGTAGGTCAAAGAGGCATGATAATACGTGGATGGGCACCACAACTGTTGATACTAAGC CATCCATCAGTCGGTGGATTTTTATCGCATTGTGGATGGAATTCTACCATGGAAGCTATTGGACGTGGTATCCCAATTTTAGCATGGCCTATCAGAGGTG ACCAAGACTATAATGCCAAACTGATAGTGAAGCATCTCAAGGTTGGGTGCATGATTTCTGATGATTTCTCACAATCGATTAAGAAAGATGATATAATCAA GGGAATAGAGAGTCTAATGAGAGACGAAGATGTCAAGAAGAGAGCAGCTTTGCTTAGTGCTAAATTTAAGCATGGGTTTCCAGCGAGCTCAGTGGATTCT CTAGATGCCTTCAGAGATTTCATAAACCAAAAGGGCAGTCGTTTGAGCTCAGCAACTTGA
AA sequence Show only first row Show all	>Potri.001G133000.3 pacid=42789207 polypeptide=Potri.001G133000.3.p locus=Potri.001G133000 ID=Potri.001G133000.3.v4.1 annot-version=v4.1 MTQEIWVVPFFGQGHLLPSMELCKHVASRNFRTTLIIPSNFSSAVPSSIHQYPLLEIAELPSSPPPLQQHPGPDPLLPPHKHDNQMAQSLENLISTRSLN PVSRQPACVIVDVMMSWTAEVFAKFEVPTIGFFTSGACSAAMEYAMWKAHLDDLKPGEIRLLQGLPEEMALTHSDLKSRPHRPPGGRGGPPGLGGPPGPM GGPPGPMGGFPGPPGDVGPSKMMGPPKPGAPPPWLEEVKGSIAYMINTCDDLEHPFIQYLVDQVKKPVWDIGPLLPELYWKSAGSLLHDHEIRTSRGSNV TEEEVIAWLDSKPPGSAVYVSFGSEVGLEMEENRHLANALEALNRPFIWVIQPGSGRPGPPPGLPSADTEEDYFPHDLDKRVGQRGMIIRGWAPQLLILS HPSVGGFLSHCGWNSTMEAIGRGIPILAWPIRGDQDYNAKLIVKHLKVGCMISDDFSQSIKKDDIIKGIESLMRDEDVKKRAALLSAKFKHGFPASSVDS LDAFRDFINQKGSRLSSAT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G15490		UGT73B4	UDP-glycosyltransferase 73B4 (...		Potri.001G133000 [exp]	0	1
AT5G13200			GRAM domain family protein (.1...		Potri.003G165500 [exp]	1.73	0.8104
AT2G36780			UDP-Glycosyltransferase superf...		Potri.003G100500 [exp]	1.73	0.8623
AT5G42260		BGLU12	beta glucosidase 12 (.1)		Potri.004G110620 [exp]	10.24	0.7655
AT5G13200			GRAM domain family protein (.1...		Potri.003G165700 [exp]	14.42	0.7618
AT5G24550		BGLU32	beta glucosidase 32 (.1)		Potri.004G110150 [exp]	15.87	0.7585
AT5G42260		BGLU12	beta glucosidase 12 (.1)		Potri.004G109166 [exp]	16.00	0.7482
AT5G44640		BGLU13	beta glucosidase 13 (.1)		Potri.004G109699 [exp]	17.43	0.7467
AT3G28210		SAP12, PMZ	STRESS-ASSOCIATED PROTEIN 12, ...		Potri.011G138500 [exp]	22.00	0.7356	PMZ.1
AT4G39150			DNAJ heat shock N-terminal dom...		Potri.004G158300 [exp]	22.13	0.7698
AT3G16510			Calcium-dependent lipid-bindin...		Potri.013G107175 [exp]	24.97	0.7094

Compare expression of checked genes

Potri.001G133000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.