Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G53160 157 / 5e-43 UGT73C7 UDP-glucosyl transferase 73C7 (.1) AT2G36800 154 / 7e-42 UGT73C5, DOGT1 UDP-GLUCOSYL TRANSFERASE 73C5, don-glucosyltransferase 1 (.1) AT2G36780 154 / 8e-42 UDP-Glycosyltransferase superfamily protein (.1) AT2G36750 154 / 1e-41 UGT73C1, UGT72C1 UDP-glucosyl transferase 73C1 (.1) AT2G36770 147 / 2e-39 UDP-Glycosyltransferase superfamily protein (.1) AT2G36760 144 / 4e-38 UGT73C2 UDP-glucosyl transferase 73C2 (.1) AT2G15480 143 / 1e-37 UGT73B5 UDP-glucosyl transferase 73B5 (.1.2) AT4G34135 142 / 2e-37 UGT73B2 UDP-glucosyltransferase 73B2 (.1.2) AT2G15490 141 / 3e-37 UGT73B4 UDP-glycosyltransferase 73B4 (.1.2.3) AT2G36790 140 / 9e-37 UGT73C6 UDP-glucosyl transferase 73C6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G100500 [exp] 255 / 2e-79 AT2G36780 161 / 2e-43 UDP-Glycosyltransferase superfamily protein (.1) Potri.001G133000 [exp] 250 / 1e-77 AT2G15490 164 / 6e-45 UDP-glycosyltransferase 73B4 (.1.2.3) Potri.001G303300 [exp] 155 / 3e-42 AT2G15480 555 / 0.0 UDP-glucosyl transferase 73B5 (.1.2) Potri.001G303700 [exp] 154 / 8e-42 AT2G15480 558 / 0.0 UDP-glucosyl transferase 73B5 (.1.2) Potri.009G098400 [exp] 152 / 4e-41 AT2G15490 505 / 8e-177 UDP-glycosyltransferase 73B4 (.1.2.3) Potri.012G048700 [exp] 152 / 6e-41 AT2G36800 550 / 0.0 UDP-GLUCOSYL TRANSFERASE 73C5, don-glucosyltransferase 1 (.1) Potri.001G302400 [exp] 150 / 2e-40 AT2G15490 494 / 1e-172 UDP-glycosyltransferase 73B4 (.1.2.3) Potri.003G210400 [exp] 149 / 6e-40 AT5G12890 525 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Potri.009G099032 [exp] 148 / 1e-39 AT2G15490 558 / 0.0 UDP-glycosyltransferase 73B4 (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012148 [exp] 227 / 5e-69 AT2G36780 169 / 1e-46 UDP-Glycosyltransferase superfamily protein (.1) Lus10007597 [exp] 223 / 1e-67 AT2G36780 168 / 4e-46 UDP-Glycosyltransferase superfamily protein (.1) Lus10014403 [exp] 153 / 2e-41 AT2G36780 506 / 6e-177 UDP-Glycosyltransferase superfamily protein (.1) Lus10014437 [exp] 152 / 5e-41 AT2G36780 545 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Lus10014079 [exp] 149 / 9e-40 AT4G34131 483 / 3e-168 UDP-glucosyl transferase 73B3 (.1) Lus10014402 [exp] 147 / 3e-39 AT2G36780 474 / 3e-164 UDP-Glycosyltransferase superfamily protein (.1) Lus10014084 [exp] 145 / 1e-38 AT2G15490 445 / 2e-153 UDP-glycosyltransferase 73B4 (.1.2.3) Lus10023893 [exp] 144 / 5e-38 AT2G36780 495 / 1e-172 UDP-Glycosyltransferase superfamily protein (.1) Lus10014086 [exp] 141 / 7e-37 AT2G15490 496 / 4e-173 UDP-glycosyltransferase 73B4 (.1.2.3) Lus10012011 [exp] 139 / 2e-36 AT2G36780 488 / 8e-170 UDP-Glycosyltransferase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [poplar] [flax] GT-B PF00201 [poplar] [flax] UDPGT UDP-glucoronosyl and UDP-glucosyl transferase
Representative CDS sequence Show only first row Show all	>Potri.001G133100.2 pacid=42787638 polypeptide=Potri.001G133100.2.p locus=Potri.001G133100 ID=Potri.001G133100.2.v4.1 annot-version=v4.1 ATGGGAATGGGACGTGATATCTATGTTGTTACAGGTCCCGGCCAAGGCCATCTCCGCCCCTGTATGCACCTCTGCAACCTCCTCAATAAACGCAATTACC ACACTACCCTCGTTCTCTCTTCTACCCTCTCCTCGGTCATTCCTCCAACTTTCGCTCAAAACCCACTGACCACCATCGCCCAAATCGCACCCTCTTCTCG ACCATTACCTGGATGCGACCTCTTAAGCCAACAAGCTGCCGAGGACCTCCGTGCCCACCTCTCCAACAGGTGCGGGGTTCCTGATTTGCCCCTGCCAATC TGTGCCATCATTGATTTCCAGTTGGGCTGGACGGGACAAGTTTTCCGGAAATTCAGTGTTCCGGTAATTGGGTTGTTTACTTTTGGCGCGAGTGCTGCTG CCATGGAGTGGGGTGCGTGGAAGGTCCAGGCTAATGATGTCAAGCCTGGTGAGACCCGTCTAGTTCCCGGGCTACCGGAAGAAATGGCCATCACTTATTG GGATCTCAAAAGAAAAGAACTTGGGCCCCCAGGCGGGATGGGCCGGATACCTGGTGGAGGCAGCCCACCAGGACCGGGTGACAAACCTCCATGGGTCTCA GAAATTGAATGGGGTCAAACGGGGATGCCGACATGGGGCGTGGGCCAACTGTTACCCGAGAAGTATTGGCAATCGTCATATAGTTTGATCGGCGATCCTC AAGAAGTGATCAAGTGGCTGGATACAAAGCCACGTGGGTCAGTTCTATACGTTGCTTTTGGTAGCGAAGTGCGTCCCAGCGTAGATGAATATAAGCAACT GGCAGATGCTTTAGAAGATTGGAGCCGACCGTTTACTTGGGTTGTTCAACACGACAAGGACCATCGTCCTGATCCGGGTTTGCAGAAAAGAGTTGGAAAT AGAGGTTTGATAATATATGGGTGGGCACCACAATTGATGATACTGAGTCATGAATCAACGGGTGGGTTTTTATCACACTGTGGATGGAATTCCACGATGG AAGCGGTCGGACGTGGGGTCCCTGTTCTGGCATGGCCCATTAGAGGCGACCAATACTACAATGCCAAGCTTGTAGTTAATTATCTGAAGGTGGGGTATAG AGTGGCTGATGATTTGTCAGAAATGGTCAAAAGGGATGATATAGTCAAGGGATTGGAGAGACTAATGGGTGATGAAGAGATGCGTGATCGGATGGTAGGA ATGAAGTCAATATTTGATAATGCTACTCCCGAGGCAGCGTTCGATTCCTTCAGTGCCTTTGTTAACCAGAAATTAAAGCCTGCTTGA
AA sequence Show only first row Show all	>Potri.001G133100.2 pacid=42787638 polypeptide=Potri.001G133100.2.p locus=Potri.001G133100 ID=Potri.001G133100.2.v4.1 annot-version=v4.1 MGMGRDIYVVTGPGQGHLRPCMHLCNLLNKRNYHTTLVLSSTLSSVIPPTFAQNPLTTIAQIAPSSRPLPGCDLLSQQAAEDLRAHLSNRCGVPDLPLPI CAIIDFQLGWTGQVFRKFSVPVIGLFTFGASAAAMEWGAWKVQANDVKPGETRLVPGLPEEMAITYWDLKRKELGPPGGMGRIPGGGSPPGPGDKPPWVS EIEWGQTGMPTWGVGQLLPEKYWQSSYSLIGDPQEVIKWLDTKPRGSVLYVAFGSEVRPSVDEYKQLADALEDWSRPFTWVVQHDKDHRPDPGLQKRVGN RGLIIYGWAPQLMILSHESTGGFLSHCGWNSTMEAVGRGVPVLAWPIRGDQYYNAKLVVNYLKVGYRVADDLSEMVKRDDIVKGLERLMGDEEMRDRMVG MKSIFDNATPEAAFDSFSAFVNQKLKPA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G53160		UGT73C7	UDP-glucosyl transferase 73C7 ...		Potri.001G133100 [exp]	0	1
AT3G52180		ATSEX4, SEX4, A...	STARCH-EXCESS 4, DUAL-SPECIFIC...		Potri.010G232200 [exp]	2.44	0.8955
AT1G18170			FKBP-like peptidyl-prolyl cis-...		Potri.012G048300 [exp]	8.06	0.9164
AT2G45330		TRPT, EMB1067	2' tRNA phosphotransferase, em...		Potri.002G117000 [exp]	14.49	0.8705
AT3G49760	bZIP	ATBZIP5	basic leucine-zipper 5 (.1)		Potri.014G007100 [exp]	20.00	0.8520
AT5G62680			Major facilitator superfamily ...		Potri.001G351200 [exp]	20.29	0.8873
AT2G36630			Sulfite exporter TauE/SafE fam...		Potri.006G117900 [exp]	24.00	0.8729
AT5G55050			GDSL-like Lipase/Acylhydrolase...		Potri.011G089700 [exp]	26.24	0.8673
					Potri.010G081351 [exp]	28.24	0.8516
					Potri.008G204301 [exp]	28.98	0.7836
AT3G47420		AtG3Pp1, ATPS3	Glycerol-3-phosphate permease ...		Potri.001G124200 [exp]	31.08	0.8627

Compare expression of checked genes

Potri.001G133100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.