Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	PCBERp4
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G32100 462 / 2e-165 ATPRR1 pinoresinol reductase 1 (.1) AT4G13660 443 / 1e-157 ATPRR2 pinoresinol reductase 2 (.1) AT1G75290 278 / 6e-93 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G19540 270 / 9e-90 NmrA-like negative transcriptional regulator family protein (.1) AT1G75280 269 / 2e-89 NmrA-like negative transcriptional regulator family protein (.1) AT4G39230 256 / 4e-84 NmrA-like negative transcriptional regulator family protein (.1) AT1G75300 251 / 2e-82 NmrA-like negative transcriptional regulator family protein (.1) AT4G34540 222 / 6e-71 NmrA-like negative transcriptional regulator family protein (.1) AT4G35250 50 / 7e-07 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G68540 45 / 4e-05 TKPR2, CCRL6 tetraketide alpha-pyrone reductase 2, cinnamoyl coA reductase-like 6, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G100200 [exp] 566 / 0 AT1G32100 462 / 2e-165 pinoresinol reductase 1 (.1) Potri.001G133200 [exp] 464 / 4e-166 AT1G32100 410 / 6e-145 pinoresinol reductase 1 (.1) Potri.009G118100 [exp] 276 / 5e-92 AT4G39230 501 / 0.0 NmrA-like negative transcriptional regulator family protein (.1) Potri.009G118300 [exp] 273 / 7e-91 AT4G39230 488 / 8e-176 NmrA-like negative transcriptional regulator family protein (.1) Potri.002G034400 [exp] 269 / 3e-89 AT1G75280 467 / 2e-167 NmrA-like negative transcriptional regulator family protein (.1) Potri.005G228700 [exp] 269 / 3e-89 AT1G75280 451 / 3e-161 NmrA-like negative transcriptional regulator family protein (.1) Potri.011G168400 [exp] 263 / 1e-86 AT4G39230 448 / 2e-159 NmrA-like negative transcriptional regulator family protein (.1) Potri.009G118000 [exp] 249 / 2e-81 AT4G34540 432 / 7e-154 NmrA-like negative transcriptional regulator family protein (.1) Potri.007G036500 [exp] 233 / 3e-75 AT4G39230 407 / 1e-143 NmrA-like negative transcriptional regulator family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010403 [exp] 493 / 1e-177 AT1G32100 446 / 1e-158 pinoresinol reductase 1 (.1) Lus10012143 [exp] 489 / 6e-176 AT1G32100 447 / 1e-159 pinoresinol reductase 1 (.1) Lus10012145 [exp] 462 / 3e-165 AT1G32100 419 / 2e-148 pinoresinol reductase 1 (.1) Lus10007599 [exp] 442 / 9e-153 AT5G48790 413 / 3e-141 Domain of unknown function (DUF1995) (.1) Lus10012147 [exp] 410 / 1e-144 AT1G32100 383 / 1e-133 pinoresinol reductase 1 (.1) Lus10026350 [exp] 285 / 3e-95 AT4G39230 454 / 3e-162 NmrA-like negative transcriptional regulator family protein (.1) Lus10040442 [exp] 284 / 3e-95 AT4G39230 462 / 2e-165 NmrA-like negative transcriptional regulator family protein (.1) Lus10042311 [exp] 278 / 7e-93 AT4G39230 489 / 4e-176 NmrA-like negative transcriptional regulator family protein (.1) Lus10023557 [exp] 279 / 2e-91 AT4G39230 461 / 2e-162 NmrA-like negative transcriptional regulator family protein (.1) Lus10026351 [exp] 274 / 3e-91 AT4G39230 481 / 4e-173 NmrA-like negative transcriptional regulator family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF01370 [poplar] [flax] Epimerase NAD dependent epimerase/dehydratase family
Representative CDS sequence Show only first row Show all	>Potri.001G133300.1 pacid=42787748 polypeptide=Potri.001G133300.1.p locus=Potri.001G133300 ID=Potri.001G133300.1.v4.1 annot-version=v4.1 ATGGCAAAGAGCAAGGTTCTTGTTGTTGGGGCTACTGGGTATATCGGTAAGAGAATTGTGAAGGCAAGCATAGACCAAGGCCATATAACCTACGTCCTTC AACGTCCTGAGACAGGCCTTGACATTGATAAGCTACAGCTGCTATTGTCATTTAAAAAGCAAGGAGCTCGCCTTGTTGAGGGTTCATTTTCCGATCAGCA AAGCCTTGTGGAGGCAGTGAAGAAGGTTGATGTTGTCATTTGCACCATGTCCGGGGTGCATTTTAAGAGCCACAACATTTTGATGCAGCTCAAGCTCGTG GATGCCATCAAAGAAGCAGGAAACGTGAAGCGTTTCTTGCCTTCGGAATTTGGTATGGACCCAGCAAGAATGGAGCATGCACTAGCACCAGGAAGAGAAA CATTTGATCAGAAAATGATAGTAAGAAAGGCAATTGAGGATGCTAAGATCCCCTTCACTTATGTATCCGCTAGCTGCTTTGCGGGTTACTTTGTTGGCAA CCTCTCTCAGCTTGAGACCCTAACCCCTCCAAAAGATAAAGTTTGTCTCTATGGAGATGGAAATGTTAAGGCTGTTTATATGGATGAAGATGATATTGCA ACATACACAATCAAAGCAATAGATGATCCTCGAGCATTGAACAAAACGTTGTACCTAAGGCCACCAGAAAACATTCTCTCACAAAGACAGTTAGTTGAGA TCTGGGAGAAACTCAGTGGAAAGAAACTAGAAAAGATCATCATTTCTGGAGAAGACTTCCTAGCTTCCATGAAAGACAAGGATTATGCAGCAAAGGCAGG AATGGGGCATTTCTATCATATTTGCTACGAAGGTAGTTTGACAAATTTTGAAATAGGAGAAGATGGAGAAGAAGCTTCGAACCTTTATCCAGAAGTGAAA TACACTCGCATGGATGAATATCTGAATATCTTTGTTTAA
AA sequence Show only first row Show all	>Potri.001G133300.1 pacid=42787748 polypeptide=Potri.001G133300.1.p locus=Potri.001G133300 ID=Potri.001G133300.1.v4.1 annot-version=v4.1 MAKSKVLVVGATGYIGKRIVKASIDQGHITYVLQRPETGLDIDKLQLLLSFKKQGARLVEGSFSDQQSLVEAVKKVDVVICTMSGVHFKSHNILMQLKLV DAIKEAGNVKRFLPSEFGMDPARMEHALAPGRETFDQKMIVRKAIEDAKIPFTYVSASCFAGYFVGNLSQLETLTPPKDKVCLYGDGNVKAVYMDEDDIA TYTIKAIDDPRALNKTLYLRPPENILSQRQLVEIWEKLSGKKLEKIIISGEDFLASMKDKDYAAKAGMGHFYHICYEGSLTNFEIGEDGEEASNLYPEVK YTRMDEYLNIFV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G32100		ATPRR1	pinoresinol reductase 1 (.1)		Potri.001G133300 [exp]	0	1	PCBERp4
AT3G56250			unknown protein		Potri.013G083700 [exp]	2.64	0.9012
AT2G27060			Leucine-rich repeat protein ki...		Potri.009G159101 [exp]	6.32	0.8468
AT1G67410			Exostosin family protein (.1)		Potri.008G034500 [exp]	6.32	0.8719
AT3G61790			Protein with RING/U-box and TR...		Potri.002G171500 [exp]	6.48	0.7975
AT1G16290			unknown protein		Potri.008G084100 [exp]	10.24	0.8463
AT5G47180			Plant VAMP (vesicle-associated...		Potri.001G152100 [exp]	14.83	0.8173
AT1G29200			O-fucosyltransferase family pr...		Potri.004G058900 [exp]	17.00	0.7947
AT2G40730		CTEXP	cytoplasmic tRNA export protei...		Potri.019G059200 [exp]	18.16	0.7432
AT3G12955			SAUR-like auxin-responsive pro...		Potri.011G143400 [exp]	19.28	0.8372	SAUR5
AT4G09060			unknown protein		Potri.002G101400 [exp]	21.16	0.7789

Compare expression of checked genes

Potri.001G133300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.