Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G80480 415 / 3e-143 PTAC17 plastid transcriptionally active 17 (.1) AT1G15730 404 / 7e-139 Cobalamin biosynthesis CobW-like protein (.1) AT1G26520 235 / 6e-74 Cobalamin biosynthesis CobW-like protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G030100 [exp] 426 / 2e-147 AT1G80480 607 / 0.0 plastid transcriptionally active 17 (.1) Potri.001G201400 [exp] 314 / 3e-103 AT1G80480 442 / 6e-153 plastid transcriptionally active 17 (.1) Potri.008G094100 [exp] 238 / 5e-75 AT1G26520 496 / 9e-177 Cobalamin biosynthesis CobW-like protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025665 [exp] 419 / 3e-144 AT1G80480 606 / 0.0 plastid transcriptionally active 17 (.1) Lus10018172 [exp] 418 / 4e-144 AT1G80480 610 / 0.0 plastid transcriptionally active 17 (.1) Lus10004653 [exp] 227 / 2e-70 AT1G26520 540 / 0.0 Cobalamin biosynthesis CobW-like protein (.1) Lus10026658 [exp] 222 / 8e-69 AT1G26520 539 / 0.0 Cobalamin biosynthesis CobW-like protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF02492 [poplar] [flax] cobW CobW/HypB/UreG, nucleotide-binding domain CL0023 [poplar] [flax] PF07683 [poplar] [flax] CobW_C Cobalamin synthesis protein cobW C-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.001G133500.2 pacid=42792582 polypeptide=Potri.001G133500.2.p locus=Potri.001G133500 ID=Potri.001G133500.2.v4.1 annot-version=v4.1 ATGGGCTCCATCAAATTCCTTGTCTCAAGAACCTCACCCAAAAATCTCTACCAACTTCTCCAAAACACTTCCCTAAATCCTTCATATTTCCCTAGAAACA TTCACTCCCTCTTTTCCAGACAATTCCACTCCTCGCAAACTGCCACCTTCTCATCTTCTTCTCTTGAACCACAACAAACTAGCGCCTCTGCTCCAGGCCC CAATACTCGTGTCCCTGCTACTGTCATAACTGGCTTTCTTGGCTCTGGAAAGACAACTTTGCTGAATCATATTCTGACATCTCAACATGGCAAGCGGATT GCTGTAATAGAAAATGAGTTTGGTGAGGTGGATATTGATGGATCGCTGGTTGCTAGTCATTCCACTGCAAGTGACGACATTATTATGGTTAATAATGGTT GCTTGTGCTGTACAGTAAGAGGAGATCTAGTTAAAATGCTCCTGGAGCTGGCGAAGAAAAATAGAGACAAATTTGATCATATTGTTATAGAAACTACAGG ACTTGCAAAGCCAGGCCCAGTTATAGAAACATTCTGCTCTGATGAGCTGGTTTCTCGTTATGTGAAACTGGATGGAGTTGTTACTATGGTGGACTCCAAG CATGTCTTGCAACATTTGAATGAATTAAAACCTAGATTTGTTGTAAATGAGGCAGTAGAACAAGTTGCTTATGCTGACCGTATTATATTGAACAAGATAG ATTTGGTGTCTGAGGAAGAACTGAAGGGATTGACTATGAGAATCAAGCATATCAATGGGATGGCTCCAATTAAGCTAGCCAAATATGGCTCTGTTGACAT GGACTTTGTCTTGGGAGTGGGAGGATATGATCTCGAAAGAATTGATTCAGAAGTTCACGTAGACAATTCCTGCAGTTCGATGCATCAACATGGGACCACA CAAGAACACCATCAAAGGCATCACCACAACCATGTGCATGATTCTGCTGTCTCTAGTGTCAGTATAGTTTTCGAGGGAATGCTTGACCTTGATGAGGTCG ATGATTGGTTAGAAAGGCTAATTGAAGAAAAAGGTGATGACTTGTACCGGATGAAAGGTGTCCTGTCCGTCACCGGCTCTGATCAACGATATATCTTCCA GGGGGTGCATTCTTTATTGGATGGTTGCCCAGGCAAAACATGGGGACCTGATGAGAAGAGAATAAACAAACTTGTGTTCATAGGAAGAAATTTAGATGAA ACTGCACTCAGAAAAGGTTTTAAAGGTTGTCTAGCATGA
AA sequence Show only first row Show all	>Potri.001G133500.2 pacid=42792582 polypeptide=Potri.001G133500.2.p locus=Potri.001G133500 ID=Potri.001G133500.2.v4.1 annot-version=v4.1 MGSIKFLVSRTSPKNLYQLLQNTSLNPSYFPRNIHSLFSRQFHSSQTATFSSSSLEPQQTSASAPGPNTRVPATVITGFLGSGKTTLLNHILTSQHGKRI AVIENEFGEVDIDGSLVASHSTASDDIIMVNNGCLCCTVRGDLVKMLLELAKKNRDKFDHIVIETTGLAKPGPVIETFCSDELVSRYVKLDGVVTMVDSK HVLQHLNELKPRFVVNEAVEQVAYADRIILNKIDLVSEEELKGLTMRIKHINGMAPIKLAKYGSVDMDFVLGVGGYDLERIDSEVHVDNSCSSMHQHGTT QEHHQRHHHNHVHDSAVSSVSIVFEGMLDLDEVDDWLERLIEEKGDDLYRMKGVLSVTGSDQRYIFQGVHSLLDGCPGKTWGPDEKRINKLVFIGRNLDE TALRKGFKGCLA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G80480		PTAC17	plastid transcriptionally acti...		Potri.001G133500 [exp]	0	1
AT5G07900			Mitochondrial transcription te...		Potri.001G034600 [exp]	3.74	0.8122
AT3G13226			regulatory protein RecX family...		Potri.001G467400 [exp]	4.89	0.7906
AT3G27550			RNA-binding CRS1 / YhbY (CRM) ...		Potri.001G343700 [exp]	8.83	0.8118
AT2G35720		OWL1	ORIENTATION UNDER VERY LOW FLU...		Potri.001G158200 [exp]	10.81	0.7774
AT3G49430		SRP34A, SR34a, ...	Serine/Arginine-Rich Protein S...		Potri.015G004600 [exp]	11.83	0.7517
AT1G07615			GTP-binding protein Obg/CgtA (...		Potri.001G239600 [exp]	13.74	0.7529
AT2G39810		HOS1	HIGH EXPRESSION OF OSMOTICALLY...		Potri.001G155200 [exp]	14.83	0.7585	Pt-HOS1.2
AT1G30960			GTP-binding family protein (.1...		Potri.001G160800 [exp]	18.76	0.7758	Pt-ERG.1
AT5G16860			Tetratricopeptide repeat (TPR)...		Potri.012G041200 [exp]	18.81	0.8075
AT1G13030			sphere organelles protein-rela...		Potri.010G048700 [exp]	20.68	0.7108

Compare expression of checked genes

Potri.001G133500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.