Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G45590 105 / 3e-29 Ribosomal protein L35 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G099900 [exp] 176 / 4e-57 AT5G45590 134 / 2e-40 Ribosomal protein L35 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010406 [exp] 117 / 7e-34 AT5G45590 147 / 1e-45 Ribosomal protein L35 (.1) Lus10010409 [exp] 117 / 7e-34 AT5G45590 147 / 1e-45 Ribosomal protein L35 (.1) Lus10012140 [exp] 99 / 1e-26 AT5G45590 148 / 7e-46 Ribosomal protein L35 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01632 [poplar] [flax] Ribosomal_L35p Ribosomal protein L35
Representative CDS sequence Show only first row Show all	>Potri.001G133600.1 pacid=42790393 polypeptide=Potri.001G133600.1.p locus=Potri.001G133600 ID=Potri.001G133600.1.v4.1 annot-version=v4.1 ATGCAGAGATTGTGCACAAAGCTTCGATCTTTAGCCTCTGTTTCCTCCTCACATCGCCTTCTCCACTCGTCTCCGCAATTTTATCACCGACCTCTCCATT TCGCCGCTGCTTCAAGTAAATGGAGTCTTAATGGGTCCCTTTTGAACACATCTTCTTCGTTACCAATTCAGCTTCCTTCGCTACCATTTCTTCCCTCTTT TCGTCTGTCTCCACTCTCCGACCCTTTGGTGCAAGTGCGTCATGTTTCATCAAGGGAGCGGAAAAAGAATAGGAAGCCAATGACTCCACTCACCTCCAAA GTCAAAAAGTTTAAAATGAAGGCTTACTCGTCGTATAAGGACAGGTTTAGGACAATGAATGATGGGACTATTCGTCGCTGGAGGGAGGGCAAGAATCATA ATGCGCACTTGAAGTCAAAGAAATCAAGACGTAGACTTAGACAACCATCTACTGTCCCTGCAGCCTATGCCAAAGTCATGAAGAAGCTTAGTTTCTGTGT TTAA
AA sequence Show only first row Show all	>Potri.001G133600.1 pacid=42790393 polypeptide=Potri.001G133600.1.p locus=Potri.001G133600 ID=Potri.001G133600.1.v4.1 annot-version=v4.1 MQRLCTKLRSLASVSSSHRLLHSSPQFYHRPLHFAAASSKWSLNGSLLNTSSSLPIQLPSLPFLPSFRLSPLSDPLVQVRHVSSRERKKNRKPMTPLTSK VKKFKMKAYSSYKDRFRTMNDGTIRRWREGKNHNAHLKSKKSRRRLRQPSTVPAAYAKVMKKLSFCV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G45590			Ribosomal protein L35 (.1)		Potri.001G133600 [exp]	0	1
AT1G14685	BBR_BPC	BBR/BPC2, ATBPC...	basic pentacysteine 2 (.1.2.3)		Potri.015G032900 [exp]	2.82	0.8676	Pt-GBP.7
AT2G34470		PSKF109, UREG	urease accessory protein G (.1...		Potri.002G243500 [exp]	5.65	0.8504	Pt-EU3.2
AT1G30910			Molybdenum cofactor sulfurase ...		Potri.003G154900 [exp]	10.39	0.8270
AT1G11120			unknown protein		Potri.019G103800 [exp]	11.40	0.8042
AT1G44835			YbaK/aminoacyl-tRNA synthetase...		Potri.005G175900 [exp]	13.56	0.7694
AT5G06160		ATO	ATROPOS, splicing factor-relat...		Potri.012G012800 [exp]	13.71	0.8085
AT5G55125			Ribosomal protein L31 (.1.2)		Potri.001G314100 [exp]	15.96	0.7186
AT4G24040		TREHALASE1, ATT...	trehalase 1 (.1)		Potri.001G087100 [exp]	16.49	0.7934
AT2G27490		ATCOAE	dephospho-CoA kinase family (....		Potri.008G053601 [exp]	17.83	0.8027
AT3G29280			unknown protein		Potri.017G090400 [exp]	19.74	0.7807

Compare expression of checked genes

Potri.001G133600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.