Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G32090 1060 / 0 early-responsive to dehydration stress protein (ERD4) (.1) AT3G21620 863 / 0 ERD (early-responsive to dehydration stress) family protein (.1) AT4G22120 830 / 0 ERD (early-responsive to dehydration stress) family protein AT4G04340 830 / 0 ERD (early-responsive to dehydration stress) family protein (.1), ERD (early-responsive to dehydration stress) family protein (.2), ERD (early-responsive to dehydration stress) family protein (.3) AT4G02900 829 / 0 ERD (early-responsive to dehydration stress) family protein (.1) AT1G11960 812 / 0 ERD (early-responsive to dehydration stress) family protein (.1) AT4G15430 810 / 0 ERD (early-responsive to dehydration stress) family protein (.1), ERD (early-responsive to dehydration stress) family protein (.2) AT1G62320 786 / 0 ERD (early-responsive to dehydration stress) family protein (.1) AT3G01100 357 / 4e-112 ATHYP1, HYP1 ARABIDOPSIS THALIANA HYPOTHETICAL PROTEIN 1, hypothetical protein 1 (.1.2) AT1G69450 330 / 2e-101 Early-responsive to dehydration stress protein (ERD4) (.1), Early-responsive to dehydration stress protein (ERD4) (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G099800 [exp] 1328 / 0 AT1G32090 1094 / 0.0 early-responsive to dehydration stress protein (ERD4) (.1) Potri.014G156100 [exp] 867 / 0 AT3G21620 1104 / 0.0 ERD (early-responsive to dehydration stress) family protein (.1) Potri.002G226800 [exp] 857 / 0 AT3G21620 1105 / 0.0 ERD (early-responsive to dehydration stress) family protein (.1) Potri.011G009900 [exp] 842 / 0 AT4G22120 1142 / 0.0 ERD (early-responsive to dehydration stress) family protein Potri.004G005900 [exp] 822 / 0 AT4G22120 1151 / 0.0 ERD (early-responsive to dehydration stress) family protein Potri.004G006100 [exp] 812 / 0 AT4G22120 1113 / 0.0 ERD (early-responsive to dehydration stress) family protein Potri.004G006000 [exp] 807 / 0 AT4G22120 1139 / 0.0 ERD (early-responsive to dehydration stress) family protein Potri.004G115800 [exp] 385 / 1e-122 AT3G01100 866 / 0.0 ARABIDOPSIS THALIANA HYPOTHETICAL PROTEIN 1, hypothetical protein 1 (.1.2) Potri.010G164100 [exp] 367 / 2e-115 AT1G69450 844 / 0.0 Early-responsive to dehydration stress protein (ERD4) (.1), Early-responsive to dehydration stress protein (ERD4) (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002133 [exp] 1127 / 0 AT1G32090 1136 / 0.0 early-responsive to dehydration stress protein (ERD4) (.1) Lus10035300 [exp] 840 / 0 AT3G21620 1146 / 0.0 ERD (early-responsive to dehydration stress) family protein (.1) Lus10030024 [exp] 838 / 0 AT3G21620 1147 / 0.0 ERD (early-responsive to dehydration stress) family protein (.1) Lus10020032 [exp] 804 / 0 AT4G22120 1186 / 0.0 ERD (early-responsive to dehydration stress) family protein Lus10015551 [exp] 800 / 0 AT4G22120 1183 / 0.0 ERD (early-responsive to dehydration stress) family protein Lus10028000 [exp] 789 / 0 AT4G02900 1116 / 0.0 ERD (early-responsive to dehydration stress) family protein (.1) Lus10024477 [exp] 789 / 0 AT1G11960 1072 / 0.0 ERD (early-responsive to dehydration stress) family protein (.1) Lus10000660 [exp] 788 / 0 AT4G02900 1113 / 0.0 ERD (early-responsive to dehydration stress) family protein (.1) Lus10002996 [exp] 785 / 0 AT4G22120 1087 / 0.0 ERD (early-responsive to dehydration stress) family protein Lus10005223 [exp] 371 / 7e-117 AT3G01100 895 / 0.0 ARABIDOPSIS THALIANA HYPOTHETICAL PROTEIN 1, hypothetical protein 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0416 [poplar] [flax] Anoctamin-like PF02714 [poplar] [flax] RSN1_7TM Calcium-dependent channel, 7TM region, putative phosphate CL0416 [poplar] [flax] PF13967 [poplar] [flax] RSN1_TM Late exocytosis, associated with Golgi transport CL0221 [poplar] [flax] RRM PF14703 [poplar] [flax] PHM7_cyt Cytosolic domain of 10TM putative phosphate transporter
Representative CDS sequence Show only first row Show all	>Potri.001G133800.1 pacid=42789472 polypeptide=Potri.001G133800.1.p locus=Potri.001G133800 ID=Potri.001G133800.1.v4.1 annot-version=v4.1 ATGGCAACTCTTCAGGACATAGGAGTCTCAGCTCTCATTAACATTCTTGGTGCTTTTGCATTCTTGCTAGCTTTTGCTCTCCTCAGAATCCAACCCATCA ATGACAGAGTTTACTTTCCGAAGTGGTACATTAGTGGAGGAAGGAGCAACCCAAGAAGGGCTGGTAACTTTGTGGGCAAATTTGTCAACCTCAATGTCAA GACTTACTTTACTTTCTTGAATTGGATGCCTCAAGCCTTGAAGATGACCGAAGCAGAGATTATCAATCATGCTGGTCTTGACTCTGCTGTTTTTTTGAGG ATTTACACTCTCGGCTTAAAGATTTTTGTGCCAATTACAATCCTTGCGCTCTTAATTCTCATTCCAGTGAATGTATCTAGCGGAACACTATTCTTCTTAA GGAAAGAATTGGTTATGAGTGACATTGACAAGCTTTCGATATCAAATGTTCGTCCTCAATCCATAAGGTTTTTTATCCACATAGCATTGGAATATGCATT CACTATATGGATTTGCTTCATGCTCTACAAAGAATACGATCATGTAGCATTGATGAGATTGCGCTTCTTGGCTTCAAAAAGAAGACATGCTGAACAGTTC ACTGTAGTGGTGAGGAATGTCCCACATGTTTCTGGCCGGTCAGTATTAGACACAGTGGAACAATTTTTTCAAACAAACCATCCAAATACTTATCTTTGTC AGCAGGCCGTCTATAATGCAAACAAATTTGCAAAGCTTGTGAGAAAAAGAGATAGACTTCAAAATTGGCTCGATTACAACCAGCTTAAATTTGAAAGACA TCCAGACAAGAGGCCCACTCGAAAGAATGGTTTTCTAGGACTTTGGGGTGAAAGAGTTGATTCTATTGAACACTACAAACAACAAATGAAGCATTTGGAG AAAAACATGGCATCGGAACGCCAAACAATTCTCAAAGACTCAAAATCTATATTGCCAGTTTCTTTTGTTTCTTTTAATTCGCGTTGGGGGGCTGCTGTTT GTGCACAAACACAACAGAGCAAGAATCCGACTTTATGGTTGACAAATTGGGCCCCAGAACCCCGTGATATTTATTGGCGTAATCTGGCTATACCGTTCAT GTCATTGACAGTCCGAAAGCTTATAATATCTGTGACAGTTTTTGCCTTGGTGTTTTTCTACATGATACCCATAGCTTTTGTGCAATCCCTTGCAAACTTA GAGGGTCTCGAGAAAGTAGCTCCTTTCCTCAGGCCAGTCATAGAATTGAAATTCATCAAGTCATTCCTACAAGGTTTCCTTCCTGGTCTAGCACTTAAAA TCTTTTTGTACATTCTACCAACAGTTTTGATGATAATGTCGAAAATCGAGGGATATATTGCACATTCAACTCTGGAGCGAAGAGCAGCAGCAAAGTATTA TTACTTTATGTTAGTGAACGTATTCTTGGGAAGCATAATTGCTGGAACGGCTTTTGAGCAGCTGGATGCTTTTCTTCACCAATCACCAACCCAGATTCCT AGGACTATTGGGGTTTCCATACCAATGAAGGCTACCTTTTTCATTACATATATTATGGTTGATGGATGGGCTGGTATTGCTGGAGAGATTCTCAGATTGA AGCCATTGATCATATTTCATCTTAAGAATATGTTTTTGGTAAAGACTGAAAGAGACATAGAAAGGGCCATGGACCCTGGTAGTGTAGATTTCCCAGAGAC TCTCCCAAGCCTCCAACTATACTTTCTTTTGGGAATCGTGTATGCAGTGGTTACTCCAATACTGCTTCCTTTTGTTCTAGTATTCTTTGCTTTTGCATAC TTGGTTTACCGTCATCAGATAGTTAATGTCTACAATCAACAATACGAGAGTGCTGCTGCATTTTGGCCACATGTTCACAGCCGTATAATTGCAAGCTTAT TGATATCTCAACTCTTACTTTTGGGCTTGCTCAGCACAAAAAAGGCAGCTAATTCCACTCCTTTGTTAGTTATCTTGCCCGTATTGACGTTATCCTTCCA CAAGTATTGCAAGATTCGCTTTGAGCCTGCATTTAGGAAGTACCCTCTTGAGGAAGCCATGGCGAAAGATATAACAGACCGTACTGCAGAATCTGATATG AACTTGAAAGCATATTTGGCTGATGCATATTTGCACCCAATTTTCCGTTCATTTGAAGAACCATTGGTCGAGGTCAAGGTAGAAAAAAACAAACCACAAA CTGCTAGTGATCGAATCAGTGAACTCAGCTCCCCTTCTCCTCCACATCAAGTCAATCATCCTTCTTCCCCACCACATCAAGTCAATCATCCTTCTTCCCC GCCACATTATGTCTATCATCCTTCTTCTCCACCTCAGCATGTCTATGACCCTTCCTCTCCATCCCATTATGCGTATCATTACGAAAATGATATCTTTCAT GCCCCCACCCCACCCCATTATGCCTATCATTACGAAAATGAGCCTTGA
AA sequence Show only first row Show all	>Potri.001G133800.1 pacid=42789472 polypeptide=Potri.001G133800.1.p locus=Potri.001G133800 ID=Potri.001G133800.1.v4.1 annot-version=v4.1 MATLQDIGVSALINILGAFAFLLAFALLRIQPINDRVYFPKWYISGGRSNPRRAGNFVGKFVNLNVKTYFTFLNWMPQALKMTEAEIINHAGLDSAVFLR IYTLGLKIFVPITILALLILIPVNVSSGTLFFLRKELVMSDIDKLSISNVRPQSIRFFIHIALEYAFTIWICFMLYKEYDHVALMRLRFLASKRRHAEQF TVVVRNVPHVSGRSVLDTVEQFFQTNHPNTYLCQQAVYNANKFAKLVRKRDRLQNWLDYNQLKFERHPDKRPTRKNGFLGLWGERVDSIEHYKQQMKHLE KNMASERQTILKDSKSILPVSFVSFNSRWGAAVCAQTQQSKNPTLWLTNWAPEPRDIYWRNLAIPFMSLTVRKLIISVTVFALVFFYMIPIAFVQSLANL EGLEKVAPFLRPVIELKFIKSFLQGFLPGLALKIFLYILPTVLMIMSKIEGYIAHSTLERRAAAKYYYFMLVNVFLGSIIAGTAFEQLDAFLHQSPTQIP RTIGVSIPMKATFFITYIMVDGWAGIAGEILRLKPLIIFHLKNMFLVKTERDIERAMDPGSVDFPETLPSLQLYFLLGIVYAVVTPILLPFVLVFFAFAY LVYRHQIVNVYNQQYESAAAFWPHVHSRIIASLLISQLLLLGLLSTKKAANSTPLLVILPVLTLSFHKYCKIRFEPAFRKYPLEEAMAKDITDRTAESDM NLKAYLADAYLHPIFRSFEEPLVEVKVEKNKPQTASDRISELSSPSPPHQVNHPSSPPHQVNHPSSPPHYVYHPSSPPQHVYDPSSPSHYAYHYENDIFH APTPPHYAYHYENEP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G32090			early-responsive to dehydratio...		Potri.001G133800 [exp]	0	1
AT2G42570		TBL39	TRICHOME BIREFRINGENCE-LIKE 39...		Potri.013G118500 [exp]	1.00	0.9423
AT2G02480		STI	STICHEL, AAA-type ATPase famil...		Potri.003G044900 [exp]	2.44	0.9224	STI.5
AT3G15820		ROD1	REDUCED OLEATE DESATURATION 1,...		Potri.001G204100 [exp]	2.44	0.9265
AT4G35930			F-box family protein (.1)		Potri.005G110200 [exp]	3.46	0.9262
AT1G14390			Leucine-rich repeat protein ki...		Potri.001G147700 [exp]	5.29	0.9248
AT1G19440		KCS4	3-ketoacyl-CoA synthase 4 (.1)		Potri.009G116700 [exp]	6.32	0.9004
AT5G20540		ATBRXL4, BRX-LI...	BREVIS RADIX-like 4 (.1)		Potri.018G064900 [exp]	6.70	0.9127
AT3G12170			Chaperone DnaJ-domain superfam...		Potri.006G056400 [exp]	11.48	0.9088	Pt-ATJ6.1
AT1G14020			O-fucosyltransferase family pr...		Potri.010G164700 [exp]	12.24	0.9238
AT5G56590			O-Glycosyl hydrolases family 1...		Potri.005G253900 [exp]	13.63	0.9021

Compare expression of checked genes

Potri.001G133800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.