Plant FIBer expression Database

Potri.001G134200 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.001G134200.1 pacid=42792129 polypeptide=Potri.001G134200.1.p locus=Potri.001G134200 ID=Potri.001G134200.1.v4.1 annot-version=v4.1
ATGGGGTTTAGTTATTTTTCATACAATCAAGATCATGATGATCAAGAGAAAGAGGAAGTACCGTCATTTTCTCCATCTGATTACAACCATGTCGATGAGA
GGAGAGATAAATTGGGTATCGATTTTTTCAAACTAAATCCTCTTGTTCTTTCCCTAAGTAAAGAAGAATGTTTCAAGACTTTGAACATGCATCACCACGA
CGACGACGACAATAATGATGACGACGACGACGACGACGATGATGATGATGATGAAGGAGAAGAAGAAGAAGAAGAAGATAGTCACGAGATTGCATGCAAG
TCGTTGATCATGAACCGTGGTGGTGGCGGCGGCGACGAGGACGAGGGACCAAGGAAGATAGACTGGGGATATCTGGAGGAGTTAATGGCTGAATTATTGG
ATGAGTTCGAATTATCAATGGACAGGTCAATAATGATGGACAATGGACAGTGTAGTTCTGTTATGAAGGTACAACAAGATGATGATGATGATGATGATGA
TTTGGAGCACCATAGTGACATAAAAGAGTTTGCTGATGATTTCAAGGTGGCTGTGCATGGATTGCATGAAGTCCAATGGGCAACGGAGCATTTCGATAGT
GGGGCTAATTGGGTGACATCTGGAGGACCCGATTGA
AA sequence
>Potri.001G134200.1 pacid=42792129 polypeptide=Potri.001G134200.1.p locus=Potri.001G134200 ID=Potri.001G134200.1.v4.1 annot-version=v4.1
MGFSYFSYNQDHDDQEKEEVPSFSPSDYNHVDERRDKLGIDFFKLNPLVLSLSKEECFKTLNMHHHDDDDNNDDDDDDDDDDDDEGEEEEEEDSHEIACK
SLIMNRGGGGGDEDEGPRKIDWGYLEELMAELLDEFELSMDRSIMMDNGQCSSVMKVQQDDDDDDDDLEHHSDIKEFADDFKVAVHGLHEVQWATEHFDS
GANWVTSGGPD

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.001G134200
[exp]
0 1
AT5G01710 methyltransferases (.1) Potri.013G153300
[exp]
6.16 0.5940
AT4G31830 unknown protein Potri.018G018300
[exp]
17.32 0.5346
AT1G44414 unknown protein Potri.002G083100
[exp]
20.34 0.5260
AT2G26250 KCS10, FDH FIDDLEHEAD, 3-ketoacyl-CoA syn... Potri.006G080400
[exp]
24.18 0.5320
AT5G13910 AP2_ERF LEAFY PETIOLE ... LEAFY PETIOLE, Integrase-type ... Potri.003G077700
[exp]
28.61 0.5377
Potri.015G051201
[exp]
30.16 0.5012
AT5G09280 Pectin lyase-like superfamily ... Potri.003G218200
[exp]
37.78 0.4900
AT2G31980 AtCYS2 PHYTOCYSTATIN 2 (.1) Potri.002G235800
[exp]
47.32 0.4919
Potri.016G115250
[exp]
50.89 0.4982
AT1G08790 Protein of unknown function (D... Potri.013G042400
[exp]
75.77 0.5124

Potri.001G134200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.