Plant FIBer expression Database

Potri.001G134800 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G45610 202 / 4e-56 SUV2 SENSITIVE TO UV 2, protein dimerizations (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.003G098700
[exp]
1001 / 0 AT5G45610 311 / 3e-96 SENSITIVE TO UV 2, protein dimerizations (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10012118
[exp]
415 / 1e-135 AT5G45610 286 / 2e-87 SENSITIVE TO UV 2, protein dimerizations (.1)
Lus10010424
[exp]
391 / 4e-126 AT5G45610 253 / 8e-75 SENSITIVE TO UV 2, protein dimerizations (.1)
PFAM info
Representative CDS sequence
>Potri.001G134800.2 pacid=42787614 polypeptide=Potri.001G134800.2.p locus=Potri.001G134800 ID=Potri.001G134800.2.v4.1 annot-version=v4.1
ATGAAAGAAGGGGAAGGGGAAGGGTTTGAAGAATGGGACGCTGATTTCTTAGACCAGTTAATCCAAGTCGAGGAACTCGCTCTCTCTTCTCAACTCCCTT
CCTCCTCCGAATCTCCCCTACCTCCCACCACCACCACCAAACTCCCCTACCTCCCACCACCGCAACAACTGCAACATGACTATCAAAATAATTCCATCAG
TTACTCTCCTCCGCGTGAACTCTCTCAAAGACCAATTGAGTTCAGCATCAACAACAACAGCAGCAGCATAACATTTGATCGTTTTTCTAACGGATTCTCG
CATTCGGCTCCTTCTACTTCTGCCTCCAAACATAATGCCAAAGACCTAGAAATTGATCGCCTAAAGAGAGAATTGGGACGCGCATCAAAGCACCTTACTG
ATTTGGAACAAGAATGCTTTGAACTTAAGAAGGAGAGAAGGAAAAGAGACGAGCAAATTAAATCTTTATATGCCGATACTGAAGAAAAAGATGTGCATAT
TCACAGCCGAAAAAAGACAAACTTTGGCAGGGAGCGTGGGGATCACAGCAAGGATGCTCATGGAATTTCCCAGCACTCTGAAAGTGCAAAACCTTTGGAG
GGTCAGATTGATATAGCTTCTACATCCAAGGCCATAGGAGTTCAGACAGAGAGAAGCATTGATTTTACCAAAGTAGAATTGAAGAATGATTCACCTTCTC
ACCCTGAACTTTCCGAAACGTTGCTTGGAATCTGGGGCTCCACAAGTGAACAACAATTGGGAAGAAATCTGATCTCCAAGTTGTTCATGATGTGCCCAAC
AGATTTTCAGGTTCTTTTTGGGTGCATGAGCATGAATAAGTCTTCCAAAGTACAAATGGACTATTTGCAAGACGAAAGCTCCTCTCATGCAGCTTTGCAG
TATCATATGTGCTCTTTTCCAGCATCTGAAGCAGCAAAAGTTTCTCATCTGTATTCTGTATTGACGAAGATCAATAATGGAGTGCTACAGTTGGAAGCTC
TGTTTAGATCTTTACTTGATTTTTGTGATGTCACACATGTTGCCATTCTTTCTAGTTCTTTGCATATACTGCTAGCCTTTTTAAAGCAACTATTGAGTTT
GGGAGCAAAATTGGGAGGGGACAATATCAAGATTGAGGGACTTTGCTCCGGGGACAGCGTTGAAGGCCAGGATCTGTTTAGTATGATCAGCTACGAGGCA
TCAAATGTGGGCTGTAGTTCGCTCGGGATTAAATCTTTTTATCCAAAACACCTGTGCAAGAAACGGTGCTGGAATGCTGAGATTTCCTTGCTGCTTTCTT
CTGTAAACTGGGTTTTGTTGTTAGAAATGATGCTTCAGATTGCTGTGAGAAATACAGAAGAATGTGTGAGACTGGAGGCAGTCTCTATCATGAATGTGAT
TCTGATGAGTAGTAATGCTCAAACAGAGATGGAAAAGTTTGGTCAATCACCAATTTTTGAAAGCATAGCACAATTGCTAAAAAGGGAAGCTGGCCTACGT
GTGCAAAAGGAAGCTCTCCATCTTCTATTCTTGTTGCTAAATTGTTCCAAGCTGTTGAGCATTTTTTGCTCTGGTTGTAAAGAGGAAGAGATTGCTGATT
CCACAAATAACAAGAAAAATACTTCAACACCCAAAGGATTCAGTAGCATCCTTGTGGGCTTGGCAGAATGTATTGCTTGCTCTGGAAATAGCTTACAGGA
TATTGAACTCTGCAAGCGGGCTATCATTATGCTGGCTTTTTTAGCATCGTCTGGAAAATTTGGCTTTGAAATTATGGTGACTCACAAGTTACGTGGAGAG
ACAAACTTTCTTATGTTGATTTTGCAAGTGTTAGTGTCTGAAATGAACGTAGAAGCTTCAGCTGAGCCAGCAAGAAGCATTAAAGCAAGGACATCGCTTA
TTCGGGAGGCACTGATATTACTTAATAGACTCGTGTCAAATACTGGCTACTCGGCGATAGTCTTGCGAATATTAACTGCTAGAAGAGATATGGCTACTTT
AACCATTGATATTGCAAGCAGGTTGTCCCAAGAAGACCAGAGTCTGAGGCTTTCTGATGTCAATGGACATGTGAAAGAATCAGAAATTGTTGAGTTAGGT
CAAGCATTTAAGAAAAGGGTTTTTGCTTATTTAGGAGATAAAATATCATAA
AA sequence
>Potri.001G134800.2 pacid=42787614 polypeptide=Potri.001G134800.2.p locus=Potri.001G134800 ID=Potri.001G134800.2.v4.1 annot-version=v4.1
MKEGEGEGFEEWDADFLDQLIQVEELALSSQLPSSSESPLPPTTTTKLPYLPPPQQLQHDYQNNSISYSPPRELSQRPIEFSINNNSSSITFDRFSNGFS
HSAPSTSASKHNAKDLEIDRLKRELGRASKHLTDLEQECFELKKERRKRDEQIKSLYADTEEKDVHIHSRKKTNFGRERGDHSKDAHGISQHSESAKPLE
GQIDIASTSKAIGVQTERSIDFTKVELKNDSPSHPELSETLLGIWGSTSEQQLGRNLISKLFMMCPTDFQVLFGCMSMNKSSKVQMDYLQDESSSHAALQ
YHMCSFPASEAAKVSHLYSVLTKINNGVLQLEALFRSLLDFCDVTHVAILSSSLHILLAFLKQLLSLGAKLGGDNIKIEGLCSGDSVEGQDLFSMISYEA
SNVGCSSLGIKSFYPKHLCKKRCWNAEISLLLSSVNWVLLLEMMLQIAVRNTEECVRLEAVSIMNVILMSSNAQTEMEKFGQSPIFESIAQLLKREAGLR
VQKEALHLLFLLLNCSKLLSIFCSGCKEEEIADSTNNKKNTSTPKGFSSILVGLAECIACSGNSLQDIELCKRAIIMLAFLASSGKFGFEIMVTHKLRGE
TNFLMLILQVLVSEMNVEASAEPARSIKARTSLIREALILLNRLVSNTGYSAIVLRILTARRDMATLTIDIASRLSQEDQSLRLSDVNGHVKESEIVELG
QAFKKRVFAYLGDKIS

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G45610 SUV2 SENSITIVE TO UV 2, protein dim... Potri.001G134800
[exp]
0 1
AT2G02090 CHA19, ETL1, CH... CHROMATIN REMODELING 19, SNF2 ... Potri.008G142600
[exp]
8.48 0.7768
AT5G41150 ATRAD1, UVH1 ULTRAVIOLET HYPERSENSITIVE 1, ... Potri.001G150400
[exp]
13.49 0.8060
AT1G15130 Endosomal targeting BRO1-like ... Potri.008G126900
[exp]
13.71 0.7969
AT2G46780 RNA-binding (RRM/RBD/RNP motif... Potri.012G022100
[exp]
14.49 0.7878
AT5G17440 LUC7 related protein (.1) Potri.019G055000
[exp]
15.49 0.7437
AT1G05910 cell division cycle protein 48... Potri.007G127900
[exp]
31.46 0.7790
AT1G21700 CHB4, ATSWI3C SWITCH/sucrose nonfermenting 3... Potri.005G180800
[exp]
32.37 0.7855 CHB904,CHB4.1
AT4G20090 EMB1025 embryo defective 1025, Pentatr... Potri.003G154800
[exp]
36.19 0.7798
AT2G46780 RNA-binding (RRM/RBD/RNP motif... Potri.015G005500
[exp]
39.23 0.7349
AT2G44730 Trihelix Alcohol dehydrogenase transcri... Potri.002G139500
[exp]
40.13 0.7714

Potri.001G134800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.