Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G21390 663 / 0 B120 S-locus lectin protein kinase family protein (.1) AT4G21380 656 / 0 ARK3 receptor kinase 3 (.1) AT1G11330 642 / 0 S-locus lectin protein kinase family protein (.1.2) AT1G61610 631 / 0 S-locus lectin protein kinase family protein (.1) AT1G11350 620 / 0 SD1-13, RKS2, CBRLK1 CALMODULIN-BINDING RECEPTOR-LIKE PROTEIN KINASE, S-domain-1 13 (.1) AT1G65800 618 / 0 ARK2 receptor kinase 2 (.1) AT1G11340 617 / 0 S-locus lectin protein kinase family protein (.1) AT4G11900 613 / 0 S-locus lectin protein kinase family protein (.1) AT4G27290 611 / 0 S-locus lectin protein kinase family protein (.1) AT1G11300 611 / 0 protein serine/threonine kinases;protein kinases;ATP binding;sugar binding;kinases;carbohydrate binding (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G014900 [exp] 1208 / 0 AT4G21390 660 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.005G014700 [exp] 1186 / 0 AT4G21390 671 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.005G014802 [exp] 717 / 0 AT1G11330 454 / 5e-152 S-locus lectin protein kinase family protein (.1.2) Potri.001G413800 [exp] 706 / 0 AT4G27290 991 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G125050 [exp] 695 / 0 AT4G27290 870 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.004G028000 [exp] 686 / 0 AT4G21380 1020 / 0.0 receptor kinase 3 (.1) Potri.011G039100 [exp] 684 / 0 AT1G11330 859 / 0.0 S-locus lectin protein kinase family protein (.1.2) Potri.011G125100 [exp] 681 / 0 AT4G27290 856 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G125601 [exp] 675 / 0 AT4G27290 914 / 0.0 S-locus lectin protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028782 [exp] 734 / 0 AT4G21380 649 / 0.0 receptor kinase 3 (.1) Lus10018516 [exp] 702 / 0 AT1G11300 699 / 0.0 protein serine/threonine kinases;protein kinases;ATP binding;sugar binding;kinases;carbohydrate binding (.1) Lus10039733 [exp] 696 / 0 AT4G27290 615 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10039731 [exp] 685 / 0 AT1G11300 1112 / 0.0 protein serine/threonine kinases;protein kinases;ATP binding;sugar binding;kinases;carbohydrate binding (.1) Lus10039767 [exp] 671 / 0 AT4G27290 588 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10038552 [exp] 659 / 0 AT4G27290 879 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10037865 [exp] 656 / 0 AT4G27300 804 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10038557 [exp] 655 / 0 AT4G27290 803 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10007603 [exp] 646 / 0 AT4G21380 942 / 0.0 receptor kinase 3 (.1) Lus10038553 [exp] 643 / 0 AT4G27290 899 / 0.0 S-locus lectin protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00954 [poplar] [flax] S_locus_glycop S-locus glycoprotein domain PF01453 [poplar] [flax] B_lectin D-mannose binding lectin CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0168 [poplar] [flax] PAN PF08276 [poplar] [flax] PAN_2 PAN-like domain CL0168 [poplar] [flax] PF11883 [poplar] [flax] DUF3403 Domain of unknown function (DUF3403)
Representative CDS sequence Show only first row Show all	>Potri.001G134900.1 pacid=42789203 polypeptide=Potri.001G134900.1.p locus=Potri.001G134900 ID=Potri.001G134900.1.v4.1 annot-version=v4.1 ATGCATGATATGACAAAATGGAGTTTTTTTCTGTCTCTGTTGCTATGTATTTTCAATACCAGAACTTGCTTCTCCAATGGGAGTGACACCCTTTCAGTGG GTCAGTCTCTATCTGTAACTCAGAGTTTAATATCTGAAGGTAGAACTTTCGAACTGGGATTCTTCAGGCCGGGTGCTTCTCAAAACATTTACCTCGGAAT TTGGTATAAGAATTTTGCGGATAAGATTATTGTTTGGGTAGCAAATAGGGAGAGCCCTTTAAATCCTGCTTCTTTGAAGCTTGAATTATCTCCTGATGGC AATCTAGTCCTGCTTACAAATTTCACGGAAACAGTTTGGTCAACAGCTCTTATATCTCCAATTCTGAATTCAACGGAAGCTATTCTTCTTGATAACGGAA ACTTTGTCATAAGAGATGTGTCAAATACATCTATTACATATTGGCAGAGTTTCGACAACCCAACCGATACATGGCTCCCTGGTGGAAAGCTTGGGATCAA TAAACAAACTGGGCAAGTGCAGCGGCTTATTTCATGGAAAAACTCAGAAGATCCAGCACCAGGTATGTTCTCGGTTGGGATTGACCCAAATGGAAGTATT CAATATTTCATAGAGTGGAACAGGTCTCATAGGTATTGGAGCAGTGGAGTTTGGAACGGGCAAGGATTTACTGCCATTCCTGAAATGAGAGTGAATATTT ACAATTTCAGTGTCATATCGAATGAAAATGAAAGCTATTTCACATATTCTTTGTCCAATACTTCAATACTTTCAAGATTTGTGATGGATAGTTCAGGAAA GATGATGCAATGGTTATGGCTGGCTGGTTCCTCGCAATGGTTTTTGTATTGGTCCCAACCGGCAGACCAAGCTGATGTTTATGCTGCATGTGGGGCTTTT GGCGTGTTCGGTGGAAGTACAACGAGCCCTTGTAAATGCATAAAAGGTTTTAAACCATTTGGACAAAATGACTGGTCAAGCGGTTGTGTTAGGGAATCCC CTTTGCAGTGTCAAAATAAGGAAGGTAATCGAAAGAAAGATGAATTCCTAAAGATGTCGAATCTTACATTACCAACAAATTCAAAAGCACATGAAGCAGC TAATGCTACAAGATGTGAATTGGATTGCTTGGGAAGTTGCTCTTGCACGGTTTTTGCCTATAATAATAGTGGGTGTTTCGTATGGGAAGGAGATCTTGTA AACTTACAACAGCAAGCTGGGGAAGGTGTTAGTTGGGCTGGAGCAGATATTTACATCAAACTTGCCGCTGCTGAGCTTCAAGTTGAGAATGGTGCTGGAA AAGGTAACAAAAGGAGAACACGGGCAATCTTGGCAGTGGTTATTCCAGTTACTTTGATTACTTTTGGCCTTTTCATATACTGCTGCTATCTGCGCAAGAG CAAGCTCCACCACAAAGGGGAGGAAGATACAAGTGAGAACTTATTGTTCTTTGATTTCGATACCTGTCCTAACTCACCAAACAATGTACCTAGCTCTGTT GATAATCGGAGGAAAAATGTTGAACTGCCATTGTTCAGTTATGAGAGTGTATCTGCTGTAACTGAACAATTCTCACACAAGCTTGGAGAGGGAGGCTTTG GACCGGTTTACAAGGGTAAATTATCCAACGGAGTGGAAGTAGCAGTGAAGAGGCTTTCAAAAAGATCTGGGCAGGGGCTCGAGGAGTTCAGAAATGAGAC AATGGTAATTGCCAGACTCCAGCACAGGAATCTTGTCAGGCTATTGGGTTGCTGCATTGAACGGGATGAGAAAATACTAATCTATGAGTACATGCCGAAT AAAAGCTTGGATTTCTTTTTATTTGATGCAAACAAACGACAAATCTTAGATTGGGGTTCACGGGTTCGCATAATAGAAGGGATTGCTCAAGGCCTTGTGT ATCTGCACAGATACTCGCGGTTACGAATTATTCACAGGGATTTAAAACCTAGCAACATTCTATTGGATAGTGAAATGAACCCCAAGATTTCCGATTTCGG GATGGCTCGAATTTTCGGAGACAGTGAAACTGAAGCAAACACCAAGAAGATTGCTGGAACGTATGGCTATATGTCCCCTGAATATGCCATGGACGGTCTC TTCTCAATAAAATCTGACGTGTTTAGCTTCGGAGTATTGTTACTTGAGATTGTAAGCGGCAGGAAGAATACTGGTTTCTACCACAGAGACTCCCTCAATC TTCTTGGACATGCATGGAAGTCATGGAATTCTAGCAGAGCTTTGGACTTGATGGATCCAGTCCTGGGGGATCCTCCTTCAACTTCTGTGCTCTTGAGACA CATTAACATAGGGCTTCTTTGTGTCCAAGAAAGTCCAGCAGATAGGCCTACAATGTCGGATGTTTTCTCCATGATTGTAAATGAACATGCACCCCTCCCA GCACCTAAACAGCCTGCTTTTGCTACAGGCAGAAACATGGGAGACACGAGTTCATCCACGAGTTCTGCAGGATTTCCTTCTGTGAATAATGTGACAGTTA CGATGATGGATGCCAGATAA
AA sequence Show only first row Show all	>Potri.001G134900.1 pacid=42789203 polypeptide=Potri.001G134900.1.p locus=Potri.001G134900 ID=Potri.001G134900.1.v4.1 annot-version=v4.1 MHDMTKWSFFLSLLLCIFNTRTCFSNGSDTLSVGQSLSVTQSLISEGRTFELGFFRPGASQNIYLGIWYKNFADKIIVWVANRESPLNPASLKLELSPDG NLVLLTNFTETVWSTALISPILNSTEAILLDNGNFVIRDVSNTSITYWQSFDNPTDTWLPGGKLGINKQTGQVQRLISWKNSEDPAPGMFSVGIDPNGSI QYFIEWNRSHRYWSSGVWNGQGFTAIPEMRVNIYNFSVISNENESYFTYSLSNTSILSRFVMDSSGKMMQWLWLAGSSQWFLYWSQPADQADVYAACGAF GVFGGSTTSPCKCIKGFKPFGQNDWSSGCVRESPLQCQNKEGNRKKDEFLKMSNLTLPTNSKAHEAANATRCELDCLGSCSCTVFAYNNSGCFVWEGDLV NLQQQAGEGVSWAGADIYIKLAAAELQVENGAGKGNKRRTRAILAVVIPVTLITFGLFIYCCYLRKSKLHHKGEEDTSENLLFFDFDTCPNSPNNVPSSV DNRRKNVELPLFSYESVSAVTEQFSHKLGEGGFGPVYKGKLSNGVEVAVKRLSKRSGQGLEEFRNETMVIARLQHRNLVRLLGCCIERDEKILIYEYMPN KSLDFFLFDANKRQILDWGSRVRIIEGIAQGLVYLHRYSRLRIIHRDLKPSNILLDSEMNPKISDFGMARIFGDSETEANTKKIAGTYGYMSPEYAMDGL FSIKSDVFSFGVLLLEIVSGRKNTGFYHRDSLNLLGHAWKSWNSSRALDLMDPVLGDPPSTSVLLRHINIGLLCVQESPADRPTMSDVFSMIVNEHAPLP APKQPAFATGRNMGDTSSSTSSAGFPSVNNVTVTMMDAR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G21390		B120	S-locus lectin protein kinase ...		Potri.001G134900 [exp]	0	1
AT2G38510			MATE efflux family protein (.1...		Potri.016G134800 [exp]	14.93	0.8657
AT2G01170		BAT1	bidirectional amino acid trans...		Potri.002G078300 [exp]	15.77	0.8616
AT3G05950			RmlC-like cupins superfamily p...		Potri.019G026700 [exp]	16.97	0.8648
AT5G39130			RmlC-like cupins superfamily p...		Potri.013G063050 [exp]	17.83	0.8577
AT5G51160			Ankyrin repeat family protein ...		Potri.015G111300 [exp]	18.70	0.8378
AT3G05950			RmlC-like cupins superfamily p...		Potri.019G025800 [exp]	29.24	0.8583
AT5G39130			RmlC-like cupins superfamily p...		Potri.013G063100 [exp]	34.29	0.8421
AT4G14465	AT-hook	AHL20	AT-hook motif nuclear-localize...		Potri.008G164466 [exp]	34.64	0.8586
AT5G39130			RmlC-like cupins superfamily p...		Potri.013G063001 [exp]	35.09	0.8419
AT5G02420			unknown protein		Potri.006G084700 [exp]	36.00	0.7674

Compare expression of checked genes

Potri.001G134900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.