Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G45620 654 / 0 Proteasome component (PCI) domain protein (.1), Proteasome component (PCI) domain protein (.2) AT4G19006 650 / 0 Proteasome component (PCI) domain protein (.1) AT3G02200 50 / 2e-06 Proteasome component (PCI) domain protein (.1), Proteasome component (PCI) domain protein (.2) AT5G15610 45 / 4e-05 Proteasome component (PCI) domain protein (.1), Proteasome component (PCI) domain protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G098400 [exp] 712 / 0 AT5G45620 647 / 0.0 Proteasome component (PCI) domain protein (.1), Proteasome component (PCI) domain protein (.2) Potri.014G047200 [exp] 46 / 2e-05 AT1G02090 394 / 5e-140 FUSCA 5, CONSTITUTIVE PHOTOMORPHOGENIC 15, ARABIDOPSIS THALIANA COP9 SIGNALOSOME SUBUNIT 7, Proteasome component (PCI) domain protein (.1), Proteasome component (PCI) domain protein (.2), Proteasome component (PCI) domain protein (.3) Potri.002G137400 [exp] 42 / 0.0006 AT1G02090 381 / 6e-135 FUSCA 5, CONSTITUTIVE PHOTOMORPHOGENIC 15, ARABIDOPSIS THALIANA COP9 SIGNALOSOME SUBUNIT 7, Proteasome component (PCI) domain protein (.1), Proteasome component (PCI) domain protein (.2), Proteasome component (PCI) domain protein (.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012120 [exp] 663 / 0 AT4G19006 665 / 0.0 Proteasome component (PCI) domain protein (.1) Lus10010423 [exp] 654 / 0 AT4G19006 651 / 0.0 Proteasome component (PCI) domain protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [poplar] [flax] HTH PF01399 [poplar] [flax] PCI PCI domain
Representative CDS sequence Show only first row Show all	>Potri.001G135200.1 pacid=42787656 polypeptide=Potri.001G135200.1.p locus=Potri.001G135200 ID=Potri.001G135200.1.v4.1 annot-version=v4.1 ATGGCCGCTCTACAGTACTTGGAGACACTGCGCAACGCGCATCCAGAACTTGACGAATGGTACAACTCACTCGCAGATCTGTACCAGAAGAAGCTCTGGC ACCAACTCACTCTCAAACTCGAACAGTTTGTCGCTCTCGCAGTCTTTCAGGCTGGGGATGCTCTTATACAGTTGTATCATAATTTTATCACCGACTTTGA GACAAAGATCAACCTTCTCAAGCTTGCACACTTTGCTGTTATAGTTTCTCGGCAGTATACAGAGAAAGATGCTGCCATTAGCTATCTTGAAGGGGTGATT GAAAAGCTTCGAGCAACTAGAGAACAGCGTATAGAAGAACCAGTCCTTTACATTAAGATGCAAATAGCCATATTCAAGCTTGAGCAGGGGGATCAAAAGG AGTGCAAAAGGCTTTTAGAAGATGGAAAGAGTACCCTTGACAGTATGACTGATATTGATCCGTCTGTGTATGCCAGTTATTATTGGGTTTCATCTCAATA CTATAAACATCGTCAGGAATTTTCTGAGTTCTATAAAAGTGCTCTTCTTTATCTGGCATATACATCAGTGGAGTCCCTCTCAGATTCATTTAAGCTGGAT TTGGCATTTGATCTCTCTCTTTCTGCACTTTTGGGTGATAACATCTACAACTTTGGAGAGTTGCTTGCGCATCCTATAATAAAGAGCCTTCTGGGAACTC AGGTTGAGTGGCTGTACTACATTCTCCAGGCATTTAACTCTGGTGACTTAGTTCGTTATCAAGAATTGTGCCGTGTACACAATGCTCCCCTGAAGGCCCA GCCAGCATTAGTTCAGAATGAGCCAAAGCTATTAGAAAAGATTAATATTCTCTGCCTGATGGAAATTATCTTTAGCCGGCCTTCTGAAGATCGAACTATT CCATTAAAAGTTATTGCTGAGCGCACTAAGCTTTCCATTGAGGACGTGGAGCATCTTCTCATGAAGAGCCTTTCTGTCCACCTTATTGAGGGTATAATTG ATCAAGTTGAAGGAACAGTGCACGTTTCGTGGGTACAGCCAAGAGTTCTGGGGATTCCACAGATCAAATCCTTGCGAGATCGACTGGACAATTGGTTGGA TAAAGTGCACACTGCTTTGTTATCGGTTGAGGCTGAAACACCTGATCTGGTTGCATCATGA
AA sequence Show only first row Show all	>Potri.001G135200.1 pacid=42787656 polypeptide=Potri.001G135200.1.p locus=Potri.001G135200 ID=Potri.001G135200.1.v4.1 annot-version=v4.1 MAALQYLETLRNAHPELDEWYNSLADLYQKKLWHQLTLKLEQFVALAVFQAGDALIQLYHNFITDFETKINLLKLAHFAVIVSRQYTEKDAAISYLEGVI EKLRATREQRIEEPVLYIKMQIAIFKLEQGDQKECKRLLEDGKSTLDSMTDIDPSVYASYYWVSSQYYKHRQEFSEFYKSALLYLAYTSVESLSDSFKLD LAFDLSLSALLGDNIYNFGELLAHPIIKSLLGTQVEWLYYILQAFNSGDLVRYQELCRVHNAPLKAQPALVQNEPKLLEKINILCLMEIIFSRPSEDRTI PLKVIAERTKLSIEDVEHLLMKSLSVHLIEGIIDQVEGTVHVSWVQPRVLGIPQIKSLRDRLDNWLDKVHTALLSVEAETPDLVAS

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G45620			Proteasome component (PCI) dom...		Potri.001G135200 [exp]	0	1
AT4G24820			26S proteasome, regulatory sub...		Potri.015G090900 [exp]	3.16	0.8998
AT1G19580		GAMMACA1 ,GAMMA...	gamma carbonic anhydrase 1 (.1...		Potri.002G034100 [exp]	4.89	0.9315	APFI.1
AT5G13450		ATP5	delta subunit of Mt ATP syntha...		Potri.009G061600 [exp]	5.19	0.9202
AT5G47030			ATPase, F1 complex, delta/epsi...		Potri.003G086100 [exp]	5.29	0.9233
AT5G23250			Succinyl-CoA ligase, alpha sub...		Potri.005G091400 [exp]	5.65	0.9026
AT1G30890			Integral membrane HRF1 family ...		Potri.017G028500 [exp]	6.70	0.8724
AT1G16470		PAB1	proteasome subunit PAB1 (.1.2)		Potri.015G122400 [exp]	8.48	0.9179
AT5G23540			Mov34/MPN/PAD-1 family protein...		Potri.002G127900 [exp]	8.71	0.8867
AT3G22110		PAC1	20S proteasome alpha subunit C...		Potri.016G015400 [exp]	8.94	0.9114
AT4G12590			Protein of unknown function DU...		Potri.006G011500 [exp]	10.48	0.8857

Compare expression of checked genes

Potri.001G135200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.