Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G31920 738 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G21065 474 / 3e-161 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT5G48910 462 / 7e-156 LPA66 LOW PSII ACCUMULATION 66, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G06540 441 / 7e-148 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G59720 441 / 9e-148 CRR28 CHLORORESPIRATORY REDUCTION28, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G40405 437 / 8e-147 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G66520 437 / 9e-147 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G08070 441 / 3e-146 EMB3102, OTP82 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G37380 436 / 8e-146 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G02980 434 / 2e-145 OTP85 ORGANELLE TRANSCRIPT PROCESSING 85, Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G001000 [exp] 490 / 5e-167 AT4G21065 793 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.016G065500 [exp] 488 / 2e-166 AT5G06540 828 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.016G077700 [exp] 471 / 5e-160 AT4G30700 489 / 1e-164 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G012600 [exp] 473 / 7e-160 AT2G29760 540 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G252400 [exp] 462 / 4e-158 AT4G21065 496 / 8e-172 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.001G369900 [exp] 456 / 8e-154 AT5G66520 512 / 2e-175 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G044700 [exp] 462 / 9e-154 AT3G22690 582 / 0.0 unknown protein Potri.014G191200 [exp] 454 / 4e-153 AT5G48910 852 / 0.0 LOW PSII ACCUMULATION 66, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.010G168800 [exp] 451 / 4e-152 AT2G02980 860 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 85, Pentatricopeptide repeat (PPR) superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029344 [exp] 481 / 9e-164 AT5G06540 803 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10014298 [exp] 469 / 1e-158 AT5G66520 748 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10026006 [exp] 456 / 1e-153 AT5G66520 746 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10039388 [exp] 452 / 8e-153 AT5G43790 506 / 8e-176 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10005207 [exp] 446 / 2e-149 AT4G21065 741 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10024971 [exp] 445 / 2e-149 AT4G37380 772 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10010385 [exp] 444 / 3e-149 AT4G37380 758 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10013319 [exp] 442 / 1e-148 AT4G21065 744 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10033026 [exp] 443 / 3e-147 AT1G08070 921 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10031989 [exp] 433 / 1e-143 AT3G26782 865 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family CL0109 [poplar] [flax] CDA PF14432 [poplar] [flax] DYW_deaminase DYW family of nucleic acid deaminases
Representative CDS sequence Show only first row Show all	>Potri.001G135400.2 pacid=42792867 polypeptide=Potri.001G135400.2.p locus=Potri.001G135400 ID=Potri.001G135400.2.v4.1 annot-version=v4.1 ATGATTGGGACTCCAGTCCTTCAGAAAATCCGTTTTTTGTCACTACCAGAAGCTCCTACACAAACCACAGGATTGAGTTTGAAGTTAAAAGAGCAAGAAT GTTTATCTCTTATGAAGAGGTGCAAGAACATGGAAGAATTCAAGCAAGTACATGCTCAAGTCCTCAAGTGGGAGAACTCCTTTTGTGCAAGCAATCTTGT GGCAACTTGTGCTCTCTCAGACTGGGGCAGCATGGACTATGCATGCTCAATTTTTCGACAAATCGATCAACCGGGTACTTTTGAATTCAATACCATGATT AGAGGATACGTAAATGTTATGAATATGGAAAATGCTTTGTTTCTTTATTATGAGATGCTTGAGAGAGGAGTTGAATCAGATAATTTTACATATCCCGCTC TTTTTAAGGCATGTGCCAGTTTAAGGTCAATAGAGGAGGGGATGCAGATTCATGGGTATATTTTTAAGCGTGGACTTGAAGGAGATTTGTTTGTGCAAAA TAGCTTGATCAACATGTATGGCAAGTGTGGGAAGATAGAACTTTCATGTTCTGTTTTTGAGCACATGGATCGTAGAGATGTTGCTTCTTGGAGTGCTATT ATAGCAGCTCACGCCAGTTTGGGCATGTGGTCTGAGTGCTTATCAGTTTTTGGAGAGATGAGTAGGGAGGGATCTTGTAGGCCAGAAGAGAGCATCCTAG TCAGTGTTCTCTCTGCCTGTACCCATTTGGGTGCTCTTGATTTGGGGAGGTGCACACACGTAACATTGTTAAGGAACATTCGGGAGATGAATGTAATAGT CCAAACTTCCTTAATAGACATGTATGTGAAATGCGGGTGTATAGAGAAAGGATTATCTCTCTTCCAAAGAATGGTGAAGAAGAACCAATTGTCCTACAGT GTAATGATCACAGGGCTTGCAATGCACGGACGCGGAATGGAGGCTCTACAGGTTTTCTCTGATATGCTTGAAGAAGGACTGAAGCCTGATGATGTTGTCT ATTTGGGTGTGTTGAGTGCTTGTAATCATGCTGGCCTTGTTGATGAAGGCTTGCAGTGTTTTAACAGAATGAAACTTGAGCATGGGATTGAGCCGACAAT TCAACATTATGGCTGCATAGTTCACCTCATGGGAAGAGCTGGGATGCTTAATGAGGCTTTAGAGCTCATCAGGTGCATGCCAATCAAGCCAAATGAAGTC GTGTGGCGAGGCCTACTCAGTGCCTGTAAATTCCATCATAACCTGGAAATTGGGGAGATCGCAGCTAAGAGCTTAGGAGAATTGAACTCAAGTAATCCTG GTGATTATGTGGTGTTATCAAATATGTATGCAAGAGCTAAAAGATGGGAGGATGTAGCTAAGATTCGGACAGAAATGGCTCGCAAGGGTTTCATTCAGAC ACCTGGATTTAGTTTGGTAGAGGTGGAGAGGAAAATTTACAAGTTTGTTTCACAAGACATGTCACACCCTCAATGCAAAGGCATATACGAGATGATTCAC CAGATGGAATGGCAGTTGAAATTCGAAGGCTATTCTCCAGATACATCACAAGTATTGTTTGATGTAGATGAAGAAGAGAAGAGGCAAAGGTTGAAAGCTC ATAGTCAAAAGTTGGCCATGGCTTTTGCACTTATACATACATCTCAGGGCGCTCCCATTAGAATAGCTAGAAACCTCAGGATGTGTAACGACTGTCACAC ATACACCAAGTTAATTTCAGTCATCTATCAAAGAGAAATTACTGTAAGAGATCGAAATCGGTTCCACCATTTTAAAGATGGAACATGCTCCTGTAGAGAT TATTGGTAA
AA sequence Show only first row Show all	>Potri.001G135400.2 pacid=42792867 polypeptide=Potri.001G135400.2.p locus=Potri.001G135400 ID=Potri.001G135400.2.v4.1 annot-version=v4.1 MIGTPVLQKIRFLSLPEAPTQTTGLSLKLKEQECLSLMKRCKNMEEFKQVHAQVLKWENSFCASNLVATCALSDWGSMDYACSIFRQIDQPGTFEFNTMI RGYVNVMNMENALFLYYEMLERGVESDNFTYPALFKACASLRSIEEGMQIHGYIFKRGLEGDLFVQNSLINMYGKCGKIELSCSVFEHMDRRDVASWSAI IAAHASLGMWSECLSVFGEMSREGSCRPEESILVSVLSACTHLGALDLGRCTHVTLLRNIREMNVIVQTSLIDMYVKCGCIEKGLSLFQRMVKKNQLSYS VMITGLAMHGRGMEALQVFSDMLEEGLKPDDVVYLGVLSACNHAGLVDEGLQCFNRMKLEHGIEPTIQHYGCIVHLMGRAGMLNEALELIRCMPIKPNEV VWRGLLSACKFHHNLEIGEIAAKSLGELNSSNPGDYVVLSNMYARAKRWEDVAKIRTEMARKGFIQTPGFSLVEVERKIYKFVSQDMSHPQCKGIYEMIH QMEWQLKFEGYSPDTSQVLFDVDEEEKRQRLKAHSQKLAMAFALIHTSQGAPIRIARNLRMCNDCHTYTKLISVIYQREITVRDRNRFHHFKDGTCSCRD YW

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G31920			Tetratricopeptide repeat (TPR)...		Potri.001G135400 [exp]	0	1
AT3G04760			Pentatricopeptide repeat (PPR-...		Potri.019G019300 [exp]	2.82	0.9538
AT4G17740			Peptidase S41 family protein (...		Potri.008G173900 [exp]	4.00	0.9641
AT4G35250			NAD(P)-binding Rossmann-fold s...		Potri.004G183100 [exp]	4.12	0.9666
AT1G11290		CRR22	CHLORORESPIRATORY REDUCTION22,...		Potri.005G151200 [exp]	5.47	0.9485
AT1G11290		CRR22	CHLORORESPIRATORY REDUCTION22,...		Potri.005G155000 [exp]	6.48	0.9444
AT3G56650			Mog1/PsbP/DUF1795-like photosy...		Potri.006G034300 [exp]	6.63	0.9608
AT3G26570		ORF02, PHT2;1	phosphate transporter 2;1 (.1....		Potri.010G046300 [exp]	7.74	0.9437
AT4G25080		CHLM	magnesium-protoporphyrin IX me...		Potri.012G106600 [exp]	8.66	0.9627
AT5G01920		STN8	State transition 8, Protein ki...		Potri.016G138500 [exp]	10.95	0.9562
AT2G33800		EMB3113	EMBRYO DEFECTIVE 3113, Ribosom...		Potri.011G053900 [exp]	11.74	0.9265

Compare expression of checked genes

Potri.001G135400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.