Plant FIBer expression Database

Potri.001G135500 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G31910 593 / 0 GHMP kinase family protein (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.003G098100
[exp]
773 / 0 AT1G31910 684 / 0.0 GHMP kinase family protein (.1.2)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10012121
[exp]
638 / 0 AT1G31910 691 / 0.0 GHMP kinase family protein (.1.2)
Lus10010422
[exp]
633 / 0 AT1G31910 690 / 0.0 GHMP kinase family protein (.1.2)
Lus10012122
[exp]
546 / 0 AT1G31910 605 / 0.0 GHMP kinase family protein (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0329 S5 PF00288 GHMP_kinases_N GHMP kinases N terminal domain
CL0677 GHMP_C PF08544 GHMP_kinases_C GHMP kinases C terminal
Representative CDS sequence
>Potri.001G135500.2 pacid=42791342 polypeptide=Potri.001G135500.2.p locus=Potri.001G135500 ID=Potri.001G135500.2.v4.1 annot-version=v4.1
ATGGCTGTAGTTGCTTCTGCTCCTGGTAAGGTTTTGATGACTGGGGGTTACCTCATACTGGAGAGACCTAATGCAGGGGTTGTTTTAAGCACAAATGCTC
GTTTCTATGCTATTGTTAAACCTCTTTATGATGAAATCAAGCCTGATAGCTGGGCCTCGGCTTGGACTGATGTTAAATTGACATCTTCCCAACTCTCCAG
AGAAAGCATCTATAAATTGTCACTGAAGAATTTAATGCTTCAATGTGTTTCTTCAAGTGAATCGAGGAATCCTTTTGTGGAGCAAGCGGTACAATATGCC
GTAGCAGCTGCACATGTTACATTTGACAAAGATAAGAAGGATGCCTTGAACAAGATACTGTTGCAAGGTCTTCATATCTTGATTTTAGGTTGCAATGACT
TCTATTCATACAGAAATCAGATTGAAGCACGTGGACTCCCTTTGACACCAGAAGCATTGGCAGCTCTTCCTCCTTTCACATCAATTAGCTTCAATGCAGA
AGAAAATGGACAAAATTGCAAGCCTGAAGTTGCGAAAACTGGATTGGGTTCATCTGCAGCAATGACCACTGCTGTGGTTGCTGCTTTGCTTCATTATCTT
GGAGTGGTTGATCTTTCATCCTTGTCTAAAGATGAGCGACCTGTAGATGTTGATATGGTGCATATTATTGCCCAAACTGCTCACTGTATTGCACAAGGGA
AAGTTGGAAGTGGTTTTGATGTCAGTTCTGCAGTTTATGGCAGTCACCGTTATGTCCGCTTTTCACCAGATATTCTTTCTTCTGCTCAGGATGCAGTGAA
AGAAATACCGTTACAGGAAGTCATGGCTTCCATCCTGAAGGGAAAGTGGGACCATGAGAGGACCAAGTTTTCTTTGCCCCCATTGATGAACCTCTTATTA
GGAGAACCCGGGACTGGAGGATCATCCACGCCATCAATGGTAGGTGCTGTGAAAAGGTGGCAGAAATCTGATCCTACAAAGGCCGAAGAAACATGGAGAA
AGTTGTCAGAGGCAAATTCAGCACTTGAAATCGAACTCAATATTTTAAGCAAGCTTGCAGAAGAAAATTGGAATGCATACAAATGTGTAATAGACATTTG
CAGCAAGCAAAGGCCAGAGAAGTGGATAGAGCAAGCCACTGTACCAAGCCAAGAAGTAGTTTTCAAAGCGTTATTAGGAGCAAGAAGCACCATGTTTGAG
ATCAGAAATCATATGCGCCAGATGGGTGAGGCTGCAGGTGTCCCGATAGAGCCTGAATCACAGACTCAACTTTTGGATGCTACTATGGGCATGGAAGGAG
TTTTGTTGGCCGGAGTTCCTGGAGCAGGAGGCTTTGATGCAGTCTTTGCCATTACGTTAGGGGACTCTGGCAGCAATGTTACCAAAGCTTGGAGCTCGCT
CAATGTTCTGGCCTTGTTGGTCAGGGAAGACCCTCATGGTGTTTCTCTAGAAACTGGAGATCCCAGAACCAAGGAAATCACATCAGCTGTTTCCGCAGTT
CAAATTGAGTGA
AA sequence
>Potri.001G135500.2 pacid=42791342 polypeptide=Potri.001G135500.2.p locus=Potri.001G135500 ID=Potri.001G135500.2.v4.1 annot-version=v4.1
MAVVASAPGKVLMTGGYLILERPNAGVVLSTNARFYAIVKPLYDEIKPDSWASAWTDVKLTSSQLSRESIYKLSLKNLMLQCVSSSESRNPFVEQAVQYA
VAAAHVTFDKDKKDALNKILLQGLHILILGCNDFYSYRNQIEARGLPLTPEALAALPPFTSISFNAEENGQNCKPEVAKTGLGSSAAMTTAVVAALLHYL
GVVDLSSLSKDERPVDVDMVHIIAQTAHCIAQGKVGSGFDVSSAVYGSHRYVRFSPDILSSAQDAVKEIPLQEVMASILKGKWDHERTKFSLPPLMNLLL
GEPGTGGSSTPSMVGAVKRWQKSDPTKAEETWRKLSEANSALEIELNILSKLAEENWNAYKCVIDICSKQRPEKWIEQATVPSQEVVFKALLGARSTMFE
IRNHMRQMGEAAGVPIEPESQTQLLDATMGMEGVLLAGVPGAGGFDAVFAITLGDSGSNVTKAWSSLNVLALLVREDPHGVSLETGDPRTKEITSAVSAV
QIE

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G31910 GHMP kinase family protein (.1... Potri.001G135500
[exp]
0 1
AT1G70630 Nucleotide-diphospho-sugar tra... Potri.010G046100
[exp]
4.89 0.7794
AT4G27190 NB-ARC domain-containing disea... Potri.001G422800
[exp]
8.71 0.7313 Pt-RGA-II24.59
AT3G50810 Uncharacterised protein family... Potri.009G110200
[exp]
10.81 0.7058
AT5G37020 ARF ARF8, ATARF8 auxin response factor 8 (.1.2) Potri.004G078200
[exp]
12.84 0.7249
AT5G47790 FHA SMAD/FHA domain-containing pro... Potri.016G003800
[exp]
14.00 0.6961
AT4G11670 Protein of unknown function (D... Potri.001G108400
[exp]
17.83 0.7113
AT1G69220 SIK1 Protein kinase superfamily pro... Potri.010G157400
[exp]
27.27 0.6727 SIK1.1
AT3G14470 NB-ARC domain-containing disea... Potri.004G197900
[exp]
28.49 0.7065
AT1G31930 XLG3 extra-large GTP-binding protei... Potri.001G135300
[exp]
29.15 0.7055
AT5G08770 unknown protein Potri.005G069900
[exp]
30.57 0.6993

Potri.001G135500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.