Plant FIBer expression Database

Potri.001G135700 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G19003 328 / 9e-117 VPS25 E2F/DP family winged-helix DNA-binding domain (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10012273
[exp]
334 / 6e-119 AT4G19003 323 / 7e-115 E2F/DP family winged-helix DNA-binding domain (.1.2)
Lus10016007
[exp]
333 / 1e-118 AT4G19003 324 / 3e-115 E2F/DP family winged-helix DNA-binding domain (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0123 HTH PF05871 ESCRT-II ESCRT-II complex subunit
Representative CDS sequence
>Potri.001G135700.1 pacid=42789391 polypeptide=Potri.001G135700.1.p locus=Potri.001G135700 ID=Potri.001G135700.1.v4.1 annot-version=v4.1
ATGCAGAAATTAGGTGACTTCAAGCTGCCCCAGTTCTTCAATTACCCGCCCTACTTCACTTTGCAGCCAGTGAGGGACACTCGAGAGAAGCAGGTACAGC
TTTGGAAGGAACTTATCCTTGATTACTGTAGGACTCAAAAGATATTCGTGATTGGACTGGAAGAAGAATTTCCTCTGTTTTCAAATCATTTGATCGAAAG
ATCTCTCAGTAATGAAGCTAGAGAAGCATTTCTATCAGCGTTAGTGTCAGAAGGCCGTGCAGAATGGTTGGACAGAGGACACAGAAAATGCCTGATTCTT
TGGCACCGGATTCAAGATTGGGCTGACATTCTCTTACATTTTGTGAGAGATAATGGCTTCGAGGACAGTGTCATGACTGTTGAGGAAATACGCACAGGGG
TTGAATCTCGGGGAACAGAACTTCATGGTATAGATCGCACAATTTTGATGCGAGCATTGAAACTACTAGAACATAAAGGGAAGCTTGCAATCTTTAAGGG
AACTTCAACTGATGATGAAGGTGTGAAATTCTCTGTGTAA
AA sequence
>Potri.001G135700.1 pacid=42789391 polypeptide=Potri.001G135700.1.p locus=Potri.001G135700 ID=Potri.001G135700.1.v4.1 annot-version=v4.1
MQKLGDFKLPQFFNYPPYFTLQPVRDTREKQVQLWKELILDYCRTQKIFVIGLEEEFPLFSNHLIERSLSNEAREAFLSALVSEGRAEWLDRGHRKCLIL
WHRIQDWADILLHFVRDNGFEDSVMTVEEIRTGVESRGTELHGIDRTILMRALKLLEHKGKLAIFKGTSTDDEGVKFSV

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G19003 VPS25 E2F/DP family winged-helix DNA... Potri.001G135700
[exp]
0 1
AT1G51740 ATSYP81, SYP81,... ORTHOLOG OF YEAST UFE1 \(UNKNO... Potri.010G194300
[exp]
2.00 0.6906 Pt-SYP81.2
AT5G38630 ACYB-1 cytochrome B561-1 (.1) Potri.004G103800
[exp]
3.46 0.6357
AT3G60820 PBF1 N-terminal nucleophile aminohy... Potri.002G148300
[exp]
4.00 0.7281 Pt-PBF1.1
AT1G78870 UBC35 ,UBC13A UBIQUITIN CONJUGATING ENZYME 1... Potri.001G392500
[exp]
6.00 0.6628
AT4G38960 CO B-box type zinc finger family ... Potri.009G124400
[exp]
8.00 0.6606
AT3G12170 Chaperone DnaJ-domain superfam... Potri.016G051800
[exp]
8.12 0.6128
AT5G32440 Ubiquitin system component Cue... Potri.018G127200
[exp]
9.21 0.6547
AT5G65650 Protein of unknown function (D... Potri.007G027700
[exp]
10.00 0.6176
AT5G63440 Protein of unknown function (D... Potri.015G094300
[exp]
16.97 0.5614
AT5G05987 PRA1.A2 prenylated RAB acceptor 1.A2 (... Potri.010G198000
[exp]
18.49 0.6184

Potri.001G135700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.