Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G68310 243 / 1e-83 AE7 AS1/2 ENHANCER7, Protein of unknown function (DUF59) (.1), Protein of unknown function (DUF59) (.2) AT3G50845 196 / 3e-65 Protein of unknown function (DUF59) (.1) AT3G09380 170 / 6e-55 Protein of unknown function (DUF59) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G098000 [exp] 284 / 5e-100 AT1G68310 257 / 2e-89 AS1/2 ENHANCER7, Protein of unknown function (DUF59) (.1), Protein of unknown function (DUF59) (.2) Potri.005G123100 [exp] 209 / 1e-70 AT3G50845 237 / 2e-81 Protein of unknown function (DUF59) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031006 [exp] 254 / 2e-88 AT1G68310 233 / 1e-79 AS1/2 ENHANCER7, Protein of unknown function (DUF59) (.1), Protein of unknown function (DUF59) (.2) Lus10035403 [exp] 248 / 6e-86 AT1G68310 230 / 7e-79 AS1/2 ENHANCER7, Protein of unknown function (DUF59) (.1), Protein of unknown function (DUF59) (.2) Lus10035404 [exp] 224 / 2e-75 AT1G68310 199 / 8e-66 AS1/2 ENHANCER7, Protein of unknown function (DUF59) (.1), Protein of unknown function (DUF59) (.2) Lus10014311 [exp] 208 / 7e-70 AT3G50845 253 / 1e-87 Protein of unknown function (DUF59) (.1) Lus10026019 [exp] 207 / 9e-70 AT3G50845 253 / 9e-88 Protein of unknown function (DUF59) (.1) Lus10031007 [exp] 73 / 2e-17 AT1G68310 70 / 2e-16 AS1/2 ENHANCER7, Protein of unknown function (DUF59) (.1), Protein of unknown function (DUF59) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0232 [poplar] [flax] NifU PF01883 [poplar] [flax] FeS_assembly_P Iron-sulfur cluster assembly protein
Representative CDS sequence Show only first row Show all	>Potri.001G135800.1 pacid=42787954 polypeptide=Potri.001G135802.1.p locus=Potri.001G135800 ID=Potri.001G135800.1.v4.1 annot-version=v4.1 ATGGCTCCTGGGCTAATCAACGCCAATCCTGTAATTTATGAAAAGAAGGAGAGGCGGGTTCGAAGTGTTGACGAAAATGAGTATACTGCTGCTGAGTCTA TTGATCAACTCGAAGTTTTTGATCATATTAGAGACATAAAAGATCCAGAGCATCCATACTCTTTGGAAGAGCTTAAAGTGATAACGGAAGATGCCATTGA AGTAGATGACAAGCTCAGTTATGTCAGGGTGACCTTTACTCCGACAGTTGAACATTGTAGCATGGCAACAGTTATTGGTCTTTGCTTGAGAGTCAAACTT ATGAGAAGCCTGCCACAACGTTACAAGGTGGATATCAAGGTTGCACCAGGAACTCATGCAACTGAAGCTGCAGTTAATAAACAACTAAATGATAAAGAGA GAGTAGCTGCAGCACTGGAAAACCCAAACCTGGTGGATATGGTTGACGAATGTTTGGCTCCGACATATGCTTGA
AA sequence Show only first row Show all	>Potri.001G135800.1 pacid=42787954 polypeptide=Potri.001G135802.1.p locus=Potri.001G135800 ID=Potri.001G135800.1.v4.1 annot-version=v4.1 MAPGLINANPVIYEKKERRVRSVDENEYTAAESIDQLEVFDHIRDIKDPEHPYSLEELKVITEDAIEVDDKLSYVRVTFTPTVEHCSMATVIGLCLRVKL MRSLPQRYKVDIKVAPGTHATEAAVNKQLNDKERVAAALENPNLVDMVDECLAPTYA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G68310		AE7	AS1/2 ENHANCER7, Protein of un...		Potri.001G135800 [exp]	0	1
AT5G03290		IDH-V	isocitrate dehydrogenase V (.1...		Potri.006G126700 [exp]	6.00	0.6968
AT5G17840			DnaJ/Hsp40 cysteine-rich domai...		Potri.013G066000 [exp]	6.24	0.6662
AT2G36305		RCE1, ATFACE2, ...	RAS-CONVERTING ENZYME 1, ARABI...		Potri.006G083300 [exp]	16.97	0.6087
AT2G34450			HMG-box (high mobility group) ...		Potri.004G131400 [exp]	19.36	0.5924
AT5G05780		RPN8A, AE3, ATH...	ASYMMETRIC LEAVES ENHANCER 3, ...		Potri.008G065300 [exp]	19.59	0.6331
AT4G29040		RPT2A	regulatory particle AAA-ATPase...		Potri.002G252600 [exp]	21.21	0.6259	Pt-RPT2.2
AT5G19990		ATSUG1, RPT6A	regulatory particle triple-A A...		Potri.010G098300 [exp]	24.08	0.6037	A1.4
AT5G40670			PQ-loop repeat family protein ...		Potri.017G070300 [exp]	25.74	0.6130
AT2G16710			Iron-sulphur cluster biosynthe...		Potri.008G020400 [exp]	26.98	0.5921
AT3G04830			Protein prenylyltransferase su...		Potri.013G038700 [exp]	27.20	0.6175

Compare expression of checked genes

Potri.001G135800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.