Plant FIBer expression Database

Potri.001G135900 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G32130 531 / 0 HNI9, ATIWS1 HIGH NITROGEN INSENSITIVE 9, ARABIDOPSIS THALIANA IWS1 \(FROM YEAST INTERACTS WITH SPT6\), Transcription elongation factor (TFIIS) family protein (.1), Transcription elongation factor (TFIIS) family protein (.2)
AT4G19000 263 / 4e-83 ATIWS2 ARABIDOPSIS THALIANA IWS2 \(FROM YEAST INTERACTS WITH SPT6\), Transcription elongation factor (TFIIS) family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.003G097700
[exp]
788 / 0 AT1G32130 526 / 0.0 HIGH NITROGEN INSENSITIVE 9, ARABIDOPSIS THALIANA IWS1 \(FROM YEAST INTERACTS WITH SPT6\), Transcription elongation factor (TFIIS) family protein (.1), Transcription elongation factor (TFIIS) family protein (.2)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10030992
[exp]
595 / 0 AT1G32130 574 / 0.0 HIGH NITROGEN INSENSITIVE 9, ARABIDOPSIS THALIANA IWS1 \(FROM YEAST INTERACTS WITH SPT6\), Transcription elongation factor (TFIIS) family protein (.1), Transcription elongation factor (TFIIS) family protein (.2)
Lus10035391
[exp]
592 / 0 AT1G32130 567 / 0.0 HIGH NITROGEN INSENSITIVE 9, ARABIDOPSIS THALIANA IWS1 \(FROM YEAST INTERACTS WITH SPT6\), Transcription elongation factor (TFIIS) family protein (.1), Transcription elongation factor (TFIIS) family protein (.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF08711 Med26 TFIIS helical bundle-like domain
Representative CDS sequence
>Potri.001G135900.1 pacid=42787724 polypeptide=Potri.001G135900.1.p locus=Potri.001G135900 ID=Potri.001G135900.1.v4.1 annot-version=v4.1
ATGGGTTATGAAGACGATCCGTACCGCGATGTGGACGGAGAACCGTTGATGGACTACGACGAAATGCAATCTGATGGCGGAGGCCAATCACCGGAACCAC
ACCAGAATCATATCTTAGACGAATTAGAGGATGATATTGAGAATTGGGAGAGGGGGAGGTCACAAACTCCTGTGTACGACACGGATAAAGTAGGAAAACC
TAGAAAAAGATTGGTTAAAAAAGGCGGCGATTCAGGGAAAGAGAGTGGCAGTGGTAGTTATGTGCAGCCAGAGTTGGTTGATGACTATGAAGAGGATTAT
GTAGGGTTTGAGAAGGAAGAATCGGCTGGGGAAGGGAAGTATGCCAAGAAATTTGCGAAGGACAAGGACAGGACGAAGTTTAGCAAAGGGGAAAATAAGT
TTGGAGGGAAAGGAAGCGGGTCGAAATCAGGGTTGAAGAAAGGAACGGCGACGAAGTTGGTGGCTGGAAAGGATGATGGCGAAGTTAAAGAGATGTGGGA
TACCATTGCTGGTGGCGATTCTGAGGATGATCAAGAAGGTGCTAGGACTGTAGATGATGACAACTTCATAGATGACAGTGGTGTGGATCCTGCTTATCAG
TATGGAAATGACAATGAACCACACTCTCCTACTGATGCTCCTCAGGCAGAGGAAGGTGAAGAGGATGAGGAAATCAAGCAGCTCTTCAAGATGGGTAAGA
GAAGGAAGAAGAATGAGAAAAGTCCTGCAGAAATTGCATTATTAGTTGAGAATGTCATGGCTGAGCTTGAGGTCACTGCTGAAGAAGATGCAGACCTCAA
TAGGCAGGGGAAGCCGGCAGTTAATAAACTCAAGAAGTTGCCTCTTCTTACTGAGGTTCTCTCAAAGAAGCAGCTCCAACAAGAGTTCATAGATCATGGA
GTACTAACGTTATTAAAAAATTGGCTAGAACCCCTTCCAGATGGAAGTTTACCTAATATAAATATCCGTGCTGCAATTTTGAGGATTTTGACTGATTTTC
CAATTGATCTGGAGCAGTATGATAGAAGAGAACAATTGAAGAAAAGTGGGCTTGGAAAGGTTATTATGTTTTTATCAAAATCTGATGAGGAAACCACATC
CAACAGAAAACTTGCCAAGGATTTGGTTGATAAATGGAGTCGGCCAATATTTAATAAGAGTACAAGGTTTGAAGACATGAGAAACGTTGATGATGATCGG
GCCTTCAGAAGGCCAACAGTGAGAAGGCCTGCAAATAATTCTACCGGAATGGAATCTAGAGATGGAGATCTTGATTTAGATATTTCACGGGAACGGAGGT
CTAGTCAATCATCAGACAGACAGCATGCATCCAGGCCAGATGCGACACCATTGGATTTTGTGGTGCGTCCCCAATCTAGGATTGATCCTGAAGAAGTTAG
GGCCTGTGCTAAACAAGTAGTTCAAGATCAGCGTCGTCTAAAGATGAATAAAAAGTTGCAGCAGCTAAAGGGACCGAAGAAGAAGCAATTGCAAGCTACA
AAGCTTAGTGTGGAAGGTCGTGGTATGGTCAAATACTTGTGA
AA sequence
>Potri.001G135900.1 pacid=42787724 polypeptide=Potri.001G135900.1.p locus=Potri.001G135900 ID=Potri.001G135900.1.v4.1 annot-version=v4.1
MGYEDDPYRDVDGEPLMDYDEMQSDGGGQSPEPHQNHILDELEDDIENWERGRSQTPVYDTDKVGKPRKRLVKKGGDSGKESGSGSYVQPELVDDYEEDY
VGFEKEESAGEGKYAKKFAKDKDRTKFSKGENKFGGKGSGSKSGLKKGTATKLVAGKDDGEVKEMWDTIAGGDSEDDQEGARTVDDDNFIDDSGVDPAYQ
YGNDNEPHSPTDAPQAEEGEEDEEIKQLFKMGKRRKKNEKSPAEIALLVENVMAELEVTAEEDADLNRQGKPAVNKLKKLPLLTEVLSKKQLQQEFIDHG
VLTLLKNWLEPLPDGSLPNINIRAAILRILTDFPIDLEQYDRREQLKKSGLGKVIMFLSKSDEETTSNRKLAKDLVDKWSRPIFNKSTRFEDMRNVDDDR
AFRRPTVRRPANNSTGMESRDGDLDLDISRERRSSQSSDRQHASRPDATPLDFVVRPQSRIDPEEVRACAKQVVQDQRRLKMNKKLQQLKGPKKKQLQAT
KLSVEGRGMVKYL

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G32130 HNI9, ATIWS1 HIGH NITROGEN INSENSITIVE 9, A... Potri.001G135900
[exp]
0 1
AT1G33520 MOS2 modifier of snc1, 2, D111/G-pa... Potri.003G104200
[exp]
4.24 0.8578
AT3G43590 zinc knuckle (CCHC-type) famil... Potri.009G155500
[exp]
5.00 0.8495
AT5G17900 microfibrillar-associated prot... Potri.019G039900
[exp]
5.65 0.8332
AT5G38720 unknown protein Potri.017G108700
[exp]
7.48 0.8404
AT3G13670 Protein kinase family protein ... Potri.001G009700
[exp]
8.71 0.8028
AT1G67230 CRWN1, LINC1 CROWDED NUCLEI 1, little nucle... Potri.017G111400
[exp]
12.12 0.8504
AT3G58110 unknown protein Potri.013G119700
[exp]
14.14 0.8328
AT5G51410 LUC7 N_terminus domain-contain... Potri.001G124300
[exp]
14.42 0.7912
AT1G32130 HNI9, ATIWS1 HIGH NITROGEN INSENSITIVE 9, A... Potri.003G097700
[exp]
16.24 0.7612
AT1G65280 DNAJ heat shock N-terminal dom... Potri.019G083700
[exp]
16.79 0.8435

Potri.001G135900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.