Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G45130 121 / 6e-35 ATSPX3 ARABIDOPSIS THALIANA SPX DOMAIN GENE 3, SPX domain gene 3 (.1) AT5G20150 94 / 2e-24 ATSPX1 ARABIDOPSIS THALIANA SPX DOMAIN GENE 1, SPX domain gene 1 (.1) AT2G26660 92 / 3e-23 ATSPX2 ARABIDOPSIS THALIANA SPX DOMAIN GENE 2, SPX domain gene 2 (.1) AT5G15330 80 / 1e-18 ATSPX4 ARABIDOPSIS THALIANA SPX DOMAIN GENE 4, SPX domain gene 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G061400 [exp] 190 / 9e-62 AT2G45130 269 / 4e-91 ARABIDOPSIS THALIANA SPX DOMAIN GENE 3, SPX domain gene 3 (.1) Potri.002G143900 [exp] 173 / 4e-55 AT2G45130 276 / 1e-93 ARABIDOPSIS THALIANA SPX DOMAIN GENE 3, SPX domain gene 3 (.1) Potri.006G069500 [exp] 88 / 1e-21 AT5G20150 359 / 8e-126 ARABIDOPSIS THALIANA SPX DOMAIN GENE 1, SPX domain gene 1 (.1) Potri.018G131500 [exp] 85 / 2e-20 AT5G20150 356 / 1e-124 ARABIDOPSIS THALIANA SPX DOMAIN GENE 1, SPX domain gene 1 (.1) Potri.006G253400 [exp] 81 / 6e-19 AT5G20150 308 / 1e-105 ARABIDOPSIS THALIANA SPX DOMAIN GENE 1, SPX domain gene 1 (.1) Potri.018G028200 [exp] 76 / 2e-17 AT2G26660 321 / 2e-110 ARABIDOPSIS THALIANA SPX DOMAIN GENE 2, SPX domain gene 2 (.1) Potri.017G086600 [exp] 74 / 2e-16 AT5G15330 335 / 4e-115 ARABIDOPSIS THALIANA SPX DOMAIN GENE 4, SPX domain gene 4 (.1) Potri.001G193200 [exp] 52 / 5e-09 AT5G20150 158 / 2e-48 ARABIDOPSIS THALIANA SPX DOMAIN GENE 1, SPX domain gene 1 (.1) Potri.014G085900 [exp] 45 / 5e-06 AT4G29910 635 / 0.0 EMBRYO DEFECTIVE 2798, origin recognition complex protein 5 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030095 [exp] 97 / 3e-25 AT5G20150 356 / 8e-125 ARABIDOPSIS THALIANA SPX DOMAIN GENE 1, SPX domain gene 1 (.1) Lus10043272 [exp] 93 / 1e-23 AT5G20150 343 / 8e-120 ARABIDOPSIS THALIANA SPX DOMAIN GENE 1, SPX domain gene 1 (.1) Lus10019415 [exp] 90 / 7e-22 AT5G20150 326 / 2e-110 ARABIDOPSIS THALIANA SPX DOMAIN GENE 1, SPX domain gene 1 (.1) Lus10002018 [exp] 78 / 6e-18 AT2G26660 308 / 2e-105 ARABIDOPSIS THALIANA SPX DOMAIN GENE 2, SPX domain gene 2 (.1) Lus10002908 [exp] 75 / 9e-17 AT2G26660 309 / 1e-105 ARABIDOPSIS THALIANA SPX DOMAIN GENE 2, SPX domain gene 2 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.001G135950.1 pacid=42792243 polypeptide=Potri.001G135950.1.p locus=Potri.001G135950 ID=Potri.001G135950.1.v4.1 annot-version=v4.1 ATGCATCCTTGTTTGATTCAACTGGGGGATCTGATAGTCGCAAAAGAAAAAGGAAGATTGGCCAAGATATTGAAGAAGTACGACAAGAGAACAGGTGGGT TATTGCGCCTTCCATTCATTCAAAAGGTGTTGGAGCAACCCTTTTTTATTACCGATCTAGTATCAAAGCTTGTCAAGCAATGCGAGTACATGATAGATAC AGTATTCCCTGTAGAGGAAGAAGAGAGAGTGAAAGAAGGAAGAGAAGCAATAACGGTTGCGGGAGAAGGGATTTTCAGGAACACAATTGCAGCTCTAATG ACCATGCAAGAAATTAGAAGAGGCAGCTCTACTTACAGCCATTTCTCTCTGCCTCCTCTGAACTTGCCAGATTCTGATCTTATTCAGTCATTCCAGCTCA ATTCTCCTATATCCATTGTCTAA
AA sequence Show only first row Show all	>Potri.001G135950.1 pacid=42792243 polypeptide=Potri.001G135950.1.p locus=Potri.001G135950 ID=Potri.001G135950.1.v4.1 annot-version=v4.1 MHPCLIQLGDLIVAKEKGRLAKILKKYDKRTGGLLRLPFIQKVLEQPFFITDLVSKLVKQCEYMIDTVFPVEEEERVKEGREAITVAGEGIFRNTIAALM TMQEIRRGSSTYSHFSLPPLNLPDSDLIQSFQLNSPISIV

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G45130		ATSPX3	ARABIDOPSIS THALIANA SPX DOMAI...		Potri.001G135950 [exp]	0	1
					Potri.012G019350 [exp]	8.12	0.9107
AT5G47650		ATNUDX2, ATNUDT...	ARABIDOPSIS THALIANA NUDIX HYD...		Potri.001G127700 [exp]	10.19	0.9086
AT3G22680		RDM1	RNA-DIRECTED DNA METHYLATION 1...		Potri.008G076500 [exp]	12.96	0.9018
AT5G66430			S-adenosyl-L-methionine-depend...		Potri.014G168166 [exp]	14.49	0.8719
AT1G33810			unknown protein		Potri.019G076400 [exp]	15.23	0.8413
AT5G51890			Peroxidase superfamily protein...		Potri.015G138300 [exp]	15.81	0.8982
					Potri.008G214723 [exp]	16.49	0.9017
AT3G58520			Ubiquitin carboxyl-terminal hy...		Potri.006G195900 [exp]	17.49	0.7657
AT1G17147			VQ motif-containing protein (....		Potri.001G378300 [exp]	18.22	0.7587
AT1G11750		NCLPP6, NCLPP1,...	NUCLEAR-ENCODED CLPP 1, CLP pr...		Potri.009G114001 [exp]	20.78	0.8701

Compare expression of checked genes

Potri.001G135950 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.