Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G35530 424 / 1e-147 bZIP AtbZIP16 basic region/leucine zipper transcription factor 16 (.1) AT1G32150 399 / 8e-138 bZIP AtbZIP68 basic region/leucine zipper transcription factor 68 (.1) AT4G36730 112 / 6e-28 bZIP GBF1 G-box binding factor 1 (.1.2) AT2G46270 102 / 4e-24 bZIP GBF3 G-box binding factor 3 (.1.2) AT4G01120 88 / 4e-19 bZIP ATBZIP54, GBF2 BASIC REGION/LEUCINE ZIPPER MOTIF 5, G-box binding factor 2 (.1) AT5G15830 66 / 1e-12 bZIP ATBZIP3 basic leucine-zipper 3 (.1) AT3G30530 63 / 1e-11 bZIP ATBZIP42 basic leucine-zipper 42 (.1) AT5G38800 62 / 3e-11 bZIP ATBZIP43 basic leucine-zipper 43 (.1) AT1G13600 62 / 3e-11 bZIP ATBZIP58 basic leucine-zipper 58 (.1) AT2G04038 59 / 3e-10 bZIP ATBZIP48 basic leucine-zipper 48 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G097600 [exp] 672 / 0 AT2G35530 447 / 1e-156 basic region/leucine zipper transcription factor 16 (.1) Potri.005G126000 [exp] 171 / 1e-49 AT4G36730 322 / 2e-109 G-box binding factor 1 (.1.2) Potri.007G029400 [exp] 171 / 2e-49 AT4G36730 302 / 1e-101 G-box binding factor 1 (.1.2) Potri.002G167100 [exp] 99 / 1e-22 AT2G46270 355 / 1e-120 G-box binding factor 3 (.1.2) Potri.014G094200 [exp] 93 / 1e-20 AT2G46270 340 / 2e-114 G-box binding factor 3 (.1.2) Potri.004G111100 [exp] 66 / 3e-12 AT3G30530 156 / 9e-49 basic leucine-zipper 42 (.1) Potri.008G113400 [exp] 64 / 1e-11 AT1G13600 139 / 2e-41 basic leucine-zipper 58 (.1) Potri.010G135200 [exp] 62 / 5e-11 AT3G30530 131 / 2e-38 basic leucine-zipper 42 (.1) Potri.017G106700 [exp] 61 / 1e-10 AT3G30530 169 / 1e-53 basic leucine-zipper 42 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014324 [exp] 159 / 6e-45 AT4G36730 291 / 2e-97 G-box binding factor 1 (.1.2) Lus10026033 [exp] 143 / 1e-38 AT4G36730 273 / 4e-90 G-box binding factor 1 (.1.2) Lus10041720 [exp] 118 / 7e-30 AT4G36730 271 / 1e-89 G-box binding factor 1 (.1.2) Lus10024030 [exp] 116 / 3e-29 AT4G36730 267 / 3e-88 G-box binding factor 1 (.1.2) Lus10005146 [exp] 107 / 4e-25 AT2G46270 340 / 1e-113 G-box binding factor 3 (.1.2) Lus10003034 [exp] 102 / 8e-24 AT2G46270 333 / 3e-111 G-box binding factor 3 (.1.2) Lus10013059 [exp] 65 / 6e-12 AT3G30530 147 / 8e-45 basic leucine-zipper 42 (.1) Lus10029101 [exp] 64 / 2e-11 AT3G30530 148 / 5e-45 basic leucine-zipper 42 (.1) Lus10024279 [exp] 58 / 8e-10 AT1G75390 166 / 6e-53 basic leucine-zipper 44 (.1.2) Lus10001347 [exp] 54 / 2e-08 AT1G75390 159 / 4e-50 basic leucine-zipper 44 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0018 [poplar] [flax] bZIP PF00170 [poplar] [flax] bZIP_1 bZIP transcription factor CL0018 [poplar] [flax] PF07777 [poplar] [flax] MFMR G-box binding protein MFMR CL0018 [poplar] [flax] PF16596 [poplar] [flax] MFMR_assoc Disordered region downstream of MFMR
Representative CDS sequence Show only first row Show all	>Potri.001G136000.2 pacid=42791219 polypeptide=Potri.001G136000.2.p locus=Potri.001G136000 ID=Potri.001G136000.2.v4.1 annot-version=v4.1 ATGGTTAGCAGTGATATGGATAAAACTGGGAAGGAAAAGGAGGCCAAGCCACCATCTGCTGCTCCTACACAGGAGCAGCCTTCAACTGCCAGTGCTACAA CTGTAAATCCAGACTGGTCTGGGTTTCAGGCATATTCTCCTATACCTCCACCTGGGTTCTTGGCATCAAGTCCCCAAGCTCACCCGTATATGTGGGGGGT TCAGCACATCATGCCTCCCTATGGTACCCCACCACATCCATATGTGGCAATGTATCCGCATGGTGTATATGCTCATCCATCCATTCCTCCGGGTTCTTAT CCTTTTAGTCCTTTTGCAATGCCTTCTCCAAATGGTATTGCTGAGGCTTCTGGAAACACTCCTGGCAGCATGGAAGCAGATGGTAGGCCATCTGATGCTA AGGAAAAACTGCCAATTAAAAGATCGAAAGGAAGTTTGGGCAGTTTAAACATGATCACTGGGAAGAACAATGAGCATGGTAAAACAACAGGAGTGTCTGC CAACGGAGCTTATTCTAAGAGTGCTGAGAGTGGTAGTGAAGGCTCCAGTGAAGGAAGTGATGCAAATTCTCAGAGTGACTCACAAATGAAGTCAGGTGGC AGGCAAGATTCTCTGGAAGACTCGTCTCAGAATGGTGGTTCAGCACATGGTGCTCAGAATGGAGGACAGGGTGCATCTAATACGATCATGAATCAAACGA TGGCTATCATGCCAATATCTGCTGCCAGTGCTCCAGGAGCTATACCTGGCCCCACAACCAACTTAAATATTGGAATGGACTACTGGGGAGCCCCTGCTTC ATCTACTGTTCCTGCAATTCGTGGGAAAGTTCCTTCTACTCCAGTTGCTGGAGGGGTAGTTTCTACTGGATCACGGGATGGTGTTCAATCGCAGATTTGG TTACAGGATGAAAGAGAGCTTAAGAGACAGAGAAGGAAGCAGTCAAACAGAGAATCCGCTCGCCGGTCCAGGTTGCGTAAACAGGCTGAATGTGATGAAC TGGCCCAACGTGCTGAAGCCTTAAAAGAAGAAAATGCCAATCTTAGATCAGAAGTAAACCAAATCAAGAGCGAGTATGAGCAACTTCTCGCGGAGAACGC CTCTCTCAAGGAGAGGCTCGGGGAAGTTTCTGGGCAGGAAGATTTTAGGGCTGGCAGGAATGACCAACATATGAGCAATGATACACAACAGACTGGACAA ACATAG
AA sequence Show only first row Show all	>Potri.001G136000.2 pacid=42791219 polypeptide=Potri.001G136000.2.p locus=Potri.001G136000 ID=Potri.001G136000.2.v4.1 annot-version=v4.1 MVSSDMDKTGKEKEAKPPSAAPTQEQPSTASATTVNPDWSGFQAYSPIPPPGFLASSPQAHPYMWGVQHIMPPYGTPPHPYVAMYPHGVYAHPSIPPGSY PFSPFAMPSPNGIAEASGNTPGSMEADGRPSDAKEKLPIKRSKGSLGSLNMITGKNNEHGKTTGVSANGAYSKSAESGSEGSSEGSDANSQSDSQMKSGG RQDSLEDSSQNGGSAHGAQNGGQGASNTIMNQTMAIMPISAASAPGAIPGPTTNLNIGMDYWGAPASSTVPAIRGKVPSTPVAGGVVSTGSRDGVQSQIW LQDERELKRQRRKQSNRESARRSRLRKQAECDELAQRAEALKEENANLRSEVNQIKSEYEQLLAENASLKERLGEVSGQEDFRAGRNDQHMSNDTQQTGQ T

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G35530	bZIP	AtbZIP16	basic region/leucine zipper tr...		Potri.001G136000 [exp]	0	1
AT4G29000	CPP		Tesmin/TSO1-like CXC domain-co...		Potri.018G083000 [exp]	11.83	0.7904
AT2G24530			unknown protein		Potri.003G187400 [exp]	20.00	0.7663
AT3G22170	FAR1_related	FHY3	far-red elongated hypocotyls 3...		Potri.016G018300 [exp]	24.18	0.7772	Pt-FHY3.1
AT1G06230		GTE4	global transcription factor gr...		Potri.019G090700 [exp]	29.25	0.7842
AT5G63120			P-loop containing nucleoside t...		Potri.015G083000 [exp]	37.62	0.7674
AT1G32610			hydroxyproline-rich glycoprote...		Potri.003G091800 [exp]	38.41	0.7707
AT2G46900			unknown protein		Potri.002G183500 [exp]	39.68	0.7447
AT1G05910			cell division cycle protein 48...		Potri.007G127900 [exp]	43.57	0.7669
AT2G21150		XCT	XAP5 CIRCADIAN TIMEKEEPER, XAP...		Potri.009G129700 [exp]	44.94	0.7471
AT3G14010		CID4	CTC-interacting domain 4 (.1.2...		Potri.001G171100 [exp]	45.23	0.7652

Compare expression of checked genes

Potri.001G136000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.