Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	XTR4.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G32170 469 / 5e-167 XTH30, XTR4 xyloglucan endotransglycosylase 4, xyloglucan endotransglucosylase/hydrolase 30 (.1) AT4G18990 425 / 2e-149 XTH29, XTR13 xyloglucan endotransglucosylase/hydrolase 29 (.1) AT1G14720 365 / 5e-126 ATXTH28, EXGT-A2, XTR2 xyloglucan endotransglycosylase related 2, ENDOXYLOGLUCAN TRANSFERASE A2, xyloglucan endotransglucosylase/hydrolase 28 (.1) AT2G01850 359 / 9e-124 ATXTH27, EXGT-A3 XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 27, endoxyloglucan transferase A3 (.1) AT1G10550 259 / 4e-85 XTH33, XET xyloglucan:xyloglucosyl transferase 33 (.1) AT4G13090 224 / 3e-71 XTH2 xyloglucan endotransglucosylase/hydrolase 2 (.1) AT4G13080 218 / 5e-69 XTH1 xyloglucan endotransglucosylase/hydrolase 1 (.1) AT5G13870 210 / 5e-66 EXGT-A4, XTH5, XTR12 endoxyloglucan transferase A4, xyloglucan endotransglucosylase/hydrolase 5 (.1) AT5G65730 208 / 3e-65 XTH6, XTR10 xyloglucan endotransglucosylase/hydrolase 6 (.1) AT3G25050 208 / 4e-65 XTH3 xyloglucan endotransglucosylase/hydrolase 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G097300 [exp] 565 / 0 AT1G32170 436 / 8e-154 xyloglucan endotransglycosylase 4, xyloglucan endotransglucosylase/hydrolase 30 (.1) Potri.008G138400 [exp] 374 / 1e-129 AT1G14720 467 / 2e-166 xyloglucan endotransglycosylase related 2, ENDOXYLOGLUCAN TRANSFERASE A2, xyloglucan endotransglucosylase/hydrolase 28 (.1) Potri.010G102300 [exp] 374 / 1e-129 AT1G14720 470 / 7e-168 xyloglucan endotransglycosylase related 2, ENDOXYLOGLUCAN TRANSFERASE A2, xyloglucan endotransglucosylase/hydrolase 28 (.1) Potri.009G163850 [exp] 306 / 9e-104 AT2G01850 319 / 6e-109 XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 27, endoxyloglucan transferase A3 (.1) Potri.014G115000 [exp] 241 / 6e-78 AT1G10550 367 / 9e-128 xyloglucan:xyloglucosyl transferase 33 (.1) Potri.002G244200 [exp] 218 / 6e-69 AT4G13090 321 / 3e-110 xyloglucan endotransglucosylase/hydrolase 2 (.1) Potri.009G006600 [exp] 206 / 4e-64 AT3G44990 407 / 3e-144 XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 31, xyloglucan endo-transglycosylase-related 8 (.1) Potri.007G008500 [exp] 202 / 1e-62 AT5G65730 472 / 6e-170 xyloglucan endotransglucosylase/hydrolase 6 (.1) Potri.016G098600 [exp] 201 / 2e-62 AT2G36870 477 / 1e-171 xyloglucan endotransglucosylase/hydrolase 32 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010427 [exp] 481 / 2e-171 AT1G32170 462 / 5e-164 xyloglucan endotransglycosylase 4, xyloglucan endotransglucosylase/hydrolase 30 (.1) Lus10012115 [exp] 427 / 8e-151 AT1G32170 401 / 9e-141 xyloglucan endotransglycosylase 4, xyloglucan endotransglucosylase/hydrolase 30 (.1) Lus10013240 [exp] 386 / 2e-134 AT2G01850 456 / 2e-162 XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 27, endoxyloglucan transferase A3 (.1) Lus10030760 [exp] 384 / 1e-133 AT1G14720 456 / 3e-162 xyloglucan endotransglycosylase related 2, ENDOXYLOGLUCAN TRANSFERASE A2, xyloglucan endotransglucosylase/hydrolase 28 (.1) Lus10029000 [exp] 365 / 5e-126 AT1G14720 457 / 1e-162 xyloglucan endotransglycosylase related 2, ENDOXYLOGLUCAN TRANSFERASE A2, xyloglucan endotransglucosylase/hydrolase 28 (.1) Lus10029165 [exp] 244 / 8e-79 AT1G10550 405 / 5e-143 xyloglucan:xyloglucosyl transferase 33 (.1) Lus10013000 [exp] 239 / 3e-77 AT1G10550 397 / 9e-140 xyloglucan:xyloglucosyl transferase 33 (.1) Lus10021422 [exp] 209 / 3e-65 AT2G36870 417 / 4e-148 xyloglucan endotransglucosylase/hydrolase 32 (.1.2) Lus10011597 [exp] 207 / 6e-65 AT5G65730 469 / 7e-169 xyloglucan endotransglucosylase/hydrolase 6 (.1) Lus10039643 [exp] 206 / 2e-64 AT5G65730 469 / 1e-168 xyloglucan endotransglucosylase/hydrolase 6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0004 [poplar] [flax] Concanavalin PF00722 [poplar] [flax] Glyco_hydro_16 Glycosyl hydrolases family 16 CL0004 [poplar] [flax] Concanavalin PF06955 [poplar] [flax] XET_C Xyloglucan endo-transglycosylase (XET) C-terminus
Representative CDS sequence Show only first row Show all	>Potri.001G136100.1 pacid=42789766 polypeptide=Potri.001G136100.1.p locus=Potri.001G136100 ID=Potri.001G136100.1.v4.1 annot-version=v4.1 ATGGTAAAGAACAAAATGGATTGCTTATGCTGTTGGTCTCTCTCGAAACCTTTCTATCTCCTTCTCTTCCTTTTCTCCTTTCCTTGTATAATTGCCAGCG CAGCTTTCAATCTCTCCACCATCTCCTTTGATGAAGGTTACAGCCCCCTCTTTGGCGACGGCAACCTTGTTCGTTCTCCTGATGGTAGAACCGCCCGCCT CCTCCTTGATCGCTTCACAGGTGCGGGTTTTATTTCATCCAAGATGTATAAATATGGATTCTTTAGTGCCAACATCAAGTTACCAGGCGACTACACTGCC GGTCTCTGCGTTGCCTTCTATACATCAAACGGGGACGTGTTCGAGAAGACCCATGATGAATTGGACTTTGAATTCCTAGGAAACACTGAAGGGAAGCCAT GGAGGTTCCAAACAAACTTGTATGGTAATGGAAGCACGAGTCGTGGCAGAGAAGAAAGATATCGATTATGGTTTGACCCTTCCAAACAGTTCCATAGGTA TAGCATTCTATGGACGGCAAAGAACACCATATTCTACATCGATGATGTTCCCATCCGAGAGGTGATTCGCAGTGAAGAAATGGGCGGCGAGTACCCATCA AAACCAATGTCCCTGTATGCTACAATATGGGATGCGTCAAATTGGGCAACTTCTGGTGGCAAATACAAGGTCAATTATAAGTATGCACCATTTGTGTCCG AATTTAAGGACTTTGTCCTAGAGGGATGCCCTTCTGACCCCATCGAGGAATTTCCTTCTGTGGATTGCTATGAGAGTTATTCCAGGCTTGAGAGTGCCGA TTATGCCACCATAACAAGGAGACAACGGTCAGCTATGCGTAAATTTCGCCAGCGTTACATGTATTATTCTTACTGCTATGATTCATTAAGGTATCCCGTG CCACCACCAGAATGTGTTGTGATTCCAACAGAGAAGGACAGGTTCAGGGACACTGGTAGATTGAGATTCGGTGGCAGCCATCAAGGCCGCAAACGCCGCT CAAGGCGGCGAGGTCGAGTTCAAGTTTCTAGTATAGAATATGATCCGGATGTGTGA
AA sequence Show only first row Show all	>Potri.001G136100.1 pacid=42789766 polypeptide=Potri.001G136100.1.p locus=Potri.001G136100 ID=Potri.001G136100.1.v4.1 annot-version=v4.1 MVKNKMDCLCCWSLSKPFYLLLFLFSFPCIIASAAFNLSTISFDEGYSPLFGDGNLVRSPDGRTARLLLDRFTGAGFISSKMYKYGFFSANIKLPGDYTA GLCVAFYTSNGDVFEKTHDELDFEFLGNTEGKPWRFQTNLYGNGSTSRGREERYRLWFDPSKQFHRYSILWTAKNTIFYIDDVPIREVIRSEEMGGEYPS KPMSLYATIWDASNWATSGGKYKVNYKYAPFVSEFKDFVLEGCPSDPIEEFPSVDCYESYSRLESADYATITRRQRSAMRKFRQRYMYYSYCYDSLRYPV PPPECVVIPTEKDRFRDTGRLRFGGSHQGRKRRSRRRGRVQVSSIEYDPDV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G32170		XTH30, XTR4	xyloglucan endotransglycosylas...		Potri.001G136100 [exp]	0	1	XTR4.2
AT1G74470			Pyridine nucleotide-disulphide...		Potri.009G157700 [exp]	1.41	0.8173
AT3G23280		XBAT35	XB3 ortholog 5 in Arabidopsis ...		Potri.010G070800 [exp]	3.16	0.8086
AT4G37970		ATCAD6	cinnamyl alcohol dehydrogenase...		Potri.016G078300 [exp]	3.16	0.7904	SAD
AT3G53820	C2H2ZnF		C2H2 and C2HC zinc fingers sup...		Potri.006G089301 [exp]	9.00	0.7927
AT5G58375			Methyltransferase-related prot...		Potri.013G155800 [exp]	10.67	0.8397
AT5G60760			P-loop containing nucleoside t...		Potri.009G009200 [exp]	13.96	0.7822
AT2G48010		RKF3	receptor-like kinase in in flo...		Potri.005G040200 [exp]	21.97	0.7719
AT1G62045			unknown protein		Potri.004G013601 [exp]	25.51	0.8131
AT4G04960			Concanavalin A-like lectin pro...		Potri.011G053100 [exp]	25.51	0.7578
AT5G25240			unknown protein		Potri.006G259300 [exp]	29.46	0.8128

Compare expression of checked genes

Potri.001G136100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.