Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G32190 410 / 4e-142 alpha/beta-Hydrolases superfamily protein (.1.2) AT2G24320 317 / 5e-107 alpha/beta-Hydrolases superfamily protein (.1) AT4G31020 307 / 4e-103 alpha/beta-Hydrolases superfamily protein (.1.2) AT3G30380 303 / 3e-100 alpha/beta-Hydrolases superfamily protein (.1.2) AT4G24760 290 / 2e-95 alpha/beta-Hydrolases superfamily protein (.1) AT3G01690 283 / 4e-93 alpha/beta-Hydrolases superfamily protein (.1) AT5G38220 282 / 6e-93 alpha/beta-Hydrolases superfamily protein (.1.2.3) AT5G14390 283 / 9e-93 alpha/beta-Hydrolases superfamily protein (.1) AT1G66900 276 / 1e-91 alpha/beta-Hydrolases superfamily protein (.1) AT1G13610 270 / 6e-88 alpha/beta-Hydrolases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G096900 [exp] 556 / 0 AT1G32190 387 / 7e-133 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.018G111400 [exp] 328 / 2e-111 AT4G31020 447 / 4e-160 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.006G188100 [exp] 325 / 3e-110 AT4G31020 440 / 3e-157 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.004G112300 [exp] 307 / 7e-102 AT3G30380 509 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.017G102500 [exp] 300 / 5e-99 AT3G30380 528 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.010G136900 [exp] 295 / 4e-97 AT3G30380 464 / 3e-164 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.008G112600 [exp] 291 / 6e-96 AT3G30380 458 / 1e-161 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.001G340000 [exp] 290 / 2e-95 AT5G14390 511 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.012G090800 [exp] 290 / 2e-95 AT4G24760 549 / 0.0 alpha/beta-Hydrolases superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030951 [exp] 474 / 3e-167 AT1G32190 465 / 2e-163 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10040096 [exp] 464 / 4e-163 AT1G32190 452 / 4e-158 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10040038 [exp] 309 / 5e-104 AT4G31020 491 / 3e-177 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10019604 [exp] 303 / 1e-101 AT4G31020 487 / 9e-176 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10035148 [exp] 300 / 3e-99 AT3G30380 579 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10031953 [exp] 300 / 3e-99 AT3G30380 571 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10017617 [exp] 280 / 7e-92 AT5G38220 508 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2.3) Lus10033575 [exp] 278 / 5e-91 AT5G38220 511 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2.3) Lus10022307 [exp] 278 / 2e-90 AT5G14390 547 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10036842 [exp] 276 / 1e-89 AT3G30380 423 / 2e-147 alpha/beta-Hydrolases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [poplar] [flax] AB_hydrolase PF12695 [poplar] [flax] Abhydrolase_5 Alpha/beta hydrolase family
Representative CDS sequence Show only first row Show all	>Potri.001G136400.1 pacid=42789120 polypeptide=Potri.001G136400.1.p locus=Potri.001G136400 ID=Potri.001G136400.1.v4.1 annot-version=v4.1 ATGGGGTGCATGTTCTCTCAACTAGCTGCACAGTTCGCTTTCTTTCCTCCATCTCCACCTACATACCAGATTAAGAAGGGAGACAATGGCAAGCTCTCTG TTGTCTCAACTTCTTCTCCTTCTATGCCGCTTCCTCTTGCTGATGATAATTCACTAGATGTGCTCATGATTGATACAAAGAGAGGCAACAAGATTGTTGC CTTTTATCTCAAAAACCCTTATGCTAGACTCACCGTGCTTTACTCTCATGGCAATGCTGCTGACCTTGGCCAGCTTTATGATCTCTTTGTCCAGCTCAAG GTCAATCTCAGAGTTAATCTCATGGGATATGACTATTCTGGTTATGGTGCCTCTTCTGGTAAGCCAAGTGAGTCCAACACATATGCTGATATAGAGGCAG TTTACGAGTGTCTCCAGACACAATATGGAGTTAGTCAGGAAGAGTTAATTTTGTATGGGCAGTCAGTTGGTAGTGGGCCAACATTGCACTTGGCAGCGAA GTTGCCAAGGCTGAGAGGGGTGGTTTTGCATAGTGCCATTCTTTCTGGTCTTCGTGTGCTCTGCCATGTGAAGTTCACATTTTGCTTTGACATATACAAG AACATAAACAAAATTCGGAAGGTGAAGTGCCCTGTTCTAGTGATACATGGCACAGAGGATGATGTTGTGAACTGGTTACATGGTGATGGGCTGTGGAAAA TGGCGAAAGAACCATATGAGCCTTTATGGATTAAAGGAGGCGGGCACTGTAACTTGGAATTATACCCTGATTACATCCGCCATCTCTGCAGGTTTATTCA TGAAATGGAGAATTTAACCACAGAAATCCGTCTCAAAAAGATCCGGCAGAATCTGTGTCTAAAACCGAGGTCTAAGACTGATTCCAACAAGTGCTGTAGG TTCAAACTGTGGCGACCTAAATGCCCAGAATGTTTAAGACCCAGGTGCATAAAATGCTCGTGGGGTCCCAGGTGCGCAGAATGCTGGAGACCCAGATGCT CAAGTTGTGTTAAATGTTGCTGGCGAGCACCCAGATGCCCAAAATGTCCGAGACCCAGTTGCCCAAAATGTCCGAAACCCAGTTGCCCAAAATGTCCGAG ACCCAGTTGCTGCTGTAGAATTAGATGTCTGCCCTGGCGATGTTGCTTTGGAAAACAGAGTGGGATGAATAGGAAGCAGGATGGGTGA
AA sequence Show only first row Show all	>Potri.001G136400.1 pacid=42789120 polypeptide=Potri.001G136400.1.p locus=Potri.001G136400 ID=Potri.001G136400.1.v4.1 annot-version=v4.1 MGCMFSQLAAQFAFFPPSPPTYQIKKGDNGKLSVVSTSSPSMPLPLADDNSLDVLMIDTKRGNKIVAFYLKNPYARLTVLYSHGNAADLGQLYDLFVQLK VNLRVNLMGYDYSGYGASSGKPSESNTYADIEAVYECLQTQYGVSQEELILYGQSVGSGPTLHLAAKLPRLRGVVLHSAILSGLRVLCHVKFTFCFDIYK NINKIRKVKCPVLVIHGTEDDVVNWLHGDGLWKMAKEPYEPLWIKGGGHCNLELYPDYIRHLCRFIHEMENLTTEIRLKKIRQNLCLKPRSKTDSNKCCR FKLWRPKCPECLRPRCIKCSWGPRCAECWRPRCSSCVKCCWRAPRCPKCPRPSCPKCPKPSCPKCPRPSCCCRIRCLPWRCCFGKQSGMNRKQDG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G32190			alpha/beta-Hydrolases superfam...		Potri.001G136400 [exp]	0	1
AT1G61667			Protein of unknown function, D...		Potri.011G032600 [exp]	2.82	0.8820
AT2G41830			Uncharacterized protein (.1)		Potri.006G052100 [exp]	3.46	0.8974
AT3G44200		IBO1, ATNEK6	"NIMA \(never in mitosis, gene...		Potri.009G020100 [exp]	3.87	0.8611
AT3G56750			unknown protein		Potri.006G040400 [exp]	4.35	0.8991
AT5G28150			Plant protein of unknown funct...		Potri.005G210800 [exp]	7.41	0.8648
AT1G28110		SCPL45	serine carboxypeptidase-like 4...		Potri.015G104700 [exp]	7.48	0.8975
AT1G14185			Glucose-methanol-choline (GMC)...		Potri.010G168100 [exp]	13.26	0.8604
AT3G25590			unknown protein		Potri.008G109600 [exp]	13.41	0.8441
AT5G19530		ACL5	ACAULIS 5, S-adenosyl-L-methio...		Potri.010G089200 [exp]	14.69	0.8475
AT5G48740			Leucine-rich repeat protein ki...		Potri.002G242700 [exp]	16.91	0.8623

Compare expression of checked genes

Potri.001G136400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.