Plant FIBer expression Database

Potri.001G136600 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G32200 587 / 0 ACT1, ATS1 ACYLTRANSFERASE 1, phospholipid/glycerol acyltransferase family protein (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10000675
[exp]
616 / 0 AT1G32200 547 / 0.0 ACYLTRANSFERASE 1, phospholipid/glycerol acyltransferase family protein (.1.2)
Lus10011062
[exp]
607 / 0 AT1G32200 548 / 0.0 ACYLTRANSFERASE 1, phospholipid/glycerol acyltransferase family protein (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0228 Acyltransferase PF01553 Acyltransferase Acyltransferase
CL0228 PF14829 GPAT_N Glycerol-3-phosphate acyltransferase N-terminal
Representative CDS sequence
>Potri.001G136600.1 pacid=42792372 polypeptide=Potri.001G136600.1.p locus=Potri.001G136600 ID=Potri.001G136600.1.v4.1 annot-version=v4.1
ATGATCCTTTCCATTCCTGCTCCTTCGTCGGCATTCTTCACAACTACTAAACCGTCTCCACCTTTTCCTAGGGTTTCTAAACTCTGCTTCTTAACCCCCT
CATATTCTCTTTCCCTTCGTTTTAGATCCACTGCTCGACGCTCCACTTCTTTTCCTTGTGTCCTCTCTTCTCTCAACCTTCACGCAATGGCTGAACTCGT
TCAGGATAAAGAAGTCTTCGCTTCTGCTGAAGTTGATTACAGCAAGAAGAAAAACAGGACTCGTTCTCGCTCGTTTCTTGATGCAACAACTGAACAAGAG
TTACTGTCGGGAATCAGGAAGGAATCAGAAGCAGGAAAACTTCCTTCAAATGTTGCTGCAGGAATGAAAGATCTGTATCAGAACTACAAAACCGCAGTTT
TGCAAAGTGGAATTCCCAACGCACATGAGATCGTATTGGAAAATATGGCTGCTGCATTGGATCTTATATTCTTGGATGTTGAGGACCCGTTTATCTTCTC
ACCTTATCACAAAGCTTTGAGAAAGCCATATGACTACTTTGAATTTGGTCAAAAGTATATCCGTCCATTGATTGATTTTAGAAATTCATATGTAGGCAAT
GTTTCCATTTTCAATGAAATTCAAGAGAAGCTTCGGCAGGGTCACAATATTGTCTTGATATCAAACCACCAAACTGAAGCAGATCCAGCTGTCATTGCAC
TGTTGCTTGAAACATCAAGCCCTCACATTGCTGAAAACTTGATCTATGTTGCTGGGGATAGAGTTGTCACAGATCCTCTTTGCAAGCCATTCAGCATGGG
AAGGAATCTTATATGTGTATACTCAAAAAAGCACATGAATGATGACCCTGAACATTCAGAGGAGAAGAGAAAAGCAAATATCCGAAGTTTGAAAGAGATG
GCTTTGCTTTTAAGGGGTGGCTCACAAATAGTCTGGATTGCACCAAGTGGTGGCAGGGACCGTCCAGATCCCTTGTCAGGAGAGTGGTATCCGGCACACT
TTGATGCTTCTTCAGTAGACAACATGAGAAGGCTTGCTGAACATTCTGGAGCTCCAGGACATGTTTATCCTCTGGCACTATTATGCCATGACATCATGCC
CCCTCCGCCTCAGGTGGAAAAGGAAATTGGAGAGAGAAGAGTTATTTCATTTCATGGAGTTGGATTATCAGTTGCACCAGAAATCAGCTTCTCTGAAGTT
ACAGCGGCATATGAAAATCCTGAAGAGGCTAAGGAGGTATATACAGAGGCTCTGTATAAGTCTGTGACTGAGCAATACAATGTGCTTAAATCTGCTGTAC
ATGGAAAACAAGGGCTAGGGGCGTCCATTCCAACTGTTTCTTTGTCACAGCCATGGAATTAG
AA sequence
>Potri.001G136600.1 pacid=42792372 polypeptide=Potri.001G136600.1.p locus=Potri.001G136600 ID=Potri.001G136600.1.v4.1 annot-version=v4.1
MILSIPAPSSAFFTTTKPSPPFPRVSKLCFLTPSYSLSLRFRSTARRSTSFPCVLSSLNLHAMAELVQDKEVFASAEVDYSKKKNRTRSRSFLDATTEQE
LLSGIRKESEAGKLPSNVAAGMKDLYQNYKTAVLQSGIPNAHEIVLENMAAALDLIFLDVEDPFIFSPYHKALRKPYDYFEFGQKYIRPLIDFRNSYVGN
VSIFNEIQEKLRQGHNIVLISNHQTEADPAVIALLLETSSPHIAENLIYVAGDRVVTDPLCKPFSMGRNLICVYSKKHMNDDPEHSEEKRKANIRSLKEM
ALLLRGGSQIVWIAPSGGRDRPDPLSGEWYPAHFDASSVDNMRRLAEHSGAPGHVYPLALLCHDIMPPPPQVEKEIGERRVISFHGVGLSVAPEISFSEV
TAAYENPEEAKEVYTEALYKSVTEQYNVLKSAVHGKQGLGASIPTVSLSQPWN

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G32200 ACT1, ATS1 ACYLTRANSFERASE 1, phospholipi... Potri.001G136600
[exp]
0 1
AT5G44000 Glutathione S-transferase fami... Potri.014G192300
[exp]
3.46 0.9525
AT4G02260 AT-RSH1, RSH1, ... RELA-SPOT HOMOLOG 1, RELA/SPOT... Potri.014G126700
[exp]
3.60 0.9540 RSH1.2
AT3G54660 ATGR2, EMB2360,... glutathione reductase (.1) Potri.015G037800
[exp]
7.93 0.9511 PtrcGR1,Pt-GR.3
AT3G17970 ATTOC64-III translocon at the outer membra... Potri.012G046900
[exp]
9.89 0.9140 TOC64.1
AT5G53170 FTSH11 FTSH protease 11 (.1) Potri.012G000700
[exp]
12.24 0.9485
AT4G33630 EX1 EXECUTER1, Protein of unknown ... Potri.017G043100
[exp]
12.64 0.9168
AT5G58140 NPL1, PHOT2 NON PHOTOTROPIC HYPOCOTYL 1-LI... Potri.004G209700
[exp]
13.22 0.9426
AT2G13440 glucose-inhibited division fam... Potri.005G066300
[exp]
14.45 0.9304
AT2G43235 unknown protein Potri.007G124600
[exp]
14.86 0.9308
AT5G08650 Small GTP-binding protein (.1) Potri.001G305300
[exp]
15.36 0.9490

Potri.001G136600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.