Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G32220 328 / 5e-113 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G15910 138 / 7e-39 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G10730 127 / 9e-35 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G268000 [exp] 160 / 2e-47 AT5G10730 431 / 1e-153 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.018G013400 [exp] 160 / 3e-47 AT5G10730 422 / 2e-150 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.004G106300 [exp] 129 / 2e-35 AT5G10730 360 / 1e-125 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010419 [exp] 335 / 2e-114 AT1G32220 397 / 5e-139 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10012126 [exp] 203 / 1e-65 AT1G32220 241 / 3e-81 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10000057 [exp] 154 / 6e-47 AT1G32220 201 / 1e-65 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10020108 [exp] 140 / 3e-39 AT5G10730 427 / 5e-152 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10035719 [exp] 125 / 8e-34 AT5G10730 271 / 9e-91 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10012127 [exp] 90 / 1e-21 AT1G32220 106 / 3e-28 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10037306 [exp] 61 / 9e-11 AT5G10730 151 / 7e-45 NAD(P)-binding Rossmann-fold superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF01370 [poplar] [flax] Epimerase NAD dependent epimerase/dehydratase family
Representative CDS sequence Show only first row Show all	>Potri.001G136900.2 pacid=42790238 polypeptide=Potri.001G136900.2.p locus=Potri.001G136900 ID=Potri.001G136900.2.v4.1 annot-version=v4.1 ATGGCGTCCATTTTATCCTTCTCTACCATTCCCACCCTTGGCTCCTCCTCCTCCTCCTCCTCCTCCCCTCGAGCTTTCTTTCCTTCTCGGCTAAGTTCGC TTTCTCTTAACCACCGTTCCAGTTTGTGCAAGTCTGTTGTAAAGTGCAGCTATGCAGAAGCAGGCGTAAAAGATGACTTCAGATCCACAACAATTGATGT TGTGGCTGATGTAAAGACCGAAAGGGTTGTAGTCCTAGGAGGTAGTGGTTTTGTGGGTTCTGCCATATGCAAGGCTGCTGTGTCCAAGGGCATAGAAGTT ATAAGCTTAAGCAGGTCAGGGCGCCCTACTTACCCTGGTTCATGGATAGATCAGGTTACTTGGATACCAGGAGATGTTTTCTATACAAACTGGGATGAGA TACTATTTGGGGCCACTGCAGTTGTTTCAACAATTGGAGGTTTTGGTAGCGAGGAGCAGATGCAAAGAATTAATGGCGAGGCTAACATTGTTTCTGTCAA TGCTGCCAAAGAATTTGGAATTCCCAAGTTTATCTTCATCTCAGTGCATGATTACAATCTACCATCATTTGTACTGTCAACTGGATACTTCACAGGAAAG AGGAAGGCAGAGGCAGAGGTTCTCTCCAAATATCCCAACTCGGGTGTAGTGTTAAGACCTGGTTTCATCTATGGAAAAAGGAGGGTTGATGGTTTTGAGA TTCCTCTGGATTTGATTGGGCAACCGGCAGAGAGAATTCTCAGTGCTATCGAGAACTTCACCAAACCCTTAAGTTCCCTTCCAGCATCCGATCTCCTGTT GGCACCTCCTGTTAATGTTGACGATCTGGCGCTTGCGGTAGTAAATGCAGTGACAGATGATGACTTCTTCGGTGTATTCACAATTGAACAAATCAAGGAA GCTGCAGCAAAGGTGAAAGTGTGA
AA sequence Show only first row Show all	>Potri.001G136900.2 pacid=42790238 polypeptide=Potri.001G136900.2.p locus=Potri.001G136900 ID=Potri.001G136900.2.v4.1 annot-version=v4.1 MASILSFSTIPTLGSSSSSSSSPRAFFPSRLSSLSLNHRSSLCKSVVKCSYAEAGVKDDFRSTTIDVVADVKTERVVVLGGSGFVGSAICKAAVSKGIEV ISLSRSGRPTYPGSWIDQVTWIPGDVFYTNWDEILFGATAVVSTIGGFGSEEQMQRINGEANIVSVNAAKEFGIPKFIFISVHDYNLPSFVLSTGYFTGK RKAEAEVLSKYPNSGVVLRPGFIYGKRRVDGFEIPLDLIGQPAERILSAIENFTKPLSSLPASDLLLAPPVNVDDLALAVVNAVTDDDFFGVFTIEQIKE AAAKVKV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G32220			NAD(P)-binding Rossmann-fold s...		Potri.001G136900 [exp]	0	1
AT3G29185			Domain of unknown function (DU...		Potri.004G120900 [exp]	2.64	0.9827
AT1G45230			Protein of unknown function (D...		Potri.014G028300 [exp]	3.74	0.9747
AT2G38780			unknown protein		Potri.001G024200 [exp]	4.58	0.9804
AT2G37220			RNA-binding (RRM/RBD/RNP motif...		Potri.016G090700 [exp]	4.69	0.9810	RBP29.1
AT3G55400		OVA1	OVULE ABORTION 1, methionyl-tR...		Potri.010G207300 [exp]	5.47	0.9784
AT5G21920		ATYLMG2	YGGT family protein (.1.2)		Potri.006G220400 [exp]	6.63	0.9802
AT4G29060		EMB2726	embryo defective 2726, elongat...		Potri.018G083900 [exp]	7.74	0.9781
AT1G08540		ATSIG1, SIG1, S...	SIGMA FACTOR B, RNA POLYMERASE...		Potri.013G070500 [exp]	8.00	0.9775	Pt-SIGB.2
AT3G17170		RFC3	REGULATOR OF FATTY-ACID COMPOS...		Potri.008G101900 [exp]	8.06	0.9750	Pt-RFC3.1
AT1G10910		EMB3103	EMBRYO DEFECTIVE 3103, Pentatr...		Potri.001G211300 [exp]	10.00	0.9727

Compare expression of checked genes

Potri.001G136900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.