Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G46910 894 / 0 Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.1) AT3G48430 242 / 2e-66 JUMONJI JMJ12, REF6 Jumonji domain-containing protein 12, relative of early flowering 6 (.1) AT4G20400 224 / 3e-61 PKDM7B, JMJ14 JUMONJI 14 (.1.2) AT2G34880 222 / 4e-61 PKDM7C, MEE27 maternal effect embryo arrest 27, Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.1) AT1G30810 218 / 1e-59 Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.1), Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.2) AT1G08620 219 / 5e-59 PKDM7D Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.1), Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.2) AT5G04240 206 / 9e-55 JUMONJI ELF6 EARLY FLOWERING 6, Zinc finger (C2H2 type) family protein / transcription factor jumonji (jmj) family protein (.1) AT1G63490 196 / 1e-51 transcription factor jumonji (jmjC) domain-containing protein (.1) AT2G38950 152 / 7e-38 Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G096100 [exp] 1541 / 0 AT5G46910 924 / 0.0 Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.1) Potri.015G089000 [exp] 266 / 2e-74 AT3G48430 807 / 0.0 Jumonji domain-containing protein 12, relative of early flowering 6 (.1) Potri.012G092400 [exp] 266 / 3e-74 AT3G48430 803 / 0.0 Jumonji domain-containing protein 12, relative of early flowering 6 (.1) Potri.019G018700 [exp] 221 / 2e-59 AT1G08620 1260 / 0.0 Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.1), Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.2) Potri.003G126600 [exp] 209 / 1e-55 AT1G63490 1013 / 0.0 transcription factor jumonji (jmjC) domain-containing protein (.1) Potri.001G440900 [exp] 208 / 2e-55 AT4G20400 733 / 0.0 JUMONJI 14 (.1.2) Potri.008G037800 [exp] 206 / 1e-54 AT5G04240 997 / 0.0 EARLY FLOWERING 6, Zinc finger (C2H2 type) family protein / transcription factor jumonji (jmj) family protein (.1) Potri.010G224700 [exp] 206 / 2e-54 AT5G04240 956 / 0.0 EARLY FLOWERING 6, Zinc finger (C2H2 type) family protein / transcription factor jumonji (jmj) family protein (.1) Potri.011G155100 [exp] 204 / 4e-54 AT4G20400 707 / 0.0 JUMONJI 14 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035385 [exp] 1030 / 0 AT5G46910 843 / 0.0 Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.1) Lus10030988 [exp] 1029 / 0 AT5G46910 850 / 0.0 Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.1) Lus10019482 [exp] 250 / 8e-69 AT3G48430 984 / 0.0 Jumonji domain-containing protein 12, relative of early flowering 6 (.1) Lus10042566 [exp] 228 / 2e-61 AT3G04490 1382 / 0.0 unknown protein Lus10022024 [exp] 215 / 2e-57 AT3G04490 1370 / 0.0 unknown protein Lus10008063 [exp] 209 / 3e-56 AT1G30810 901 / 0.0 Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.1), Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.2) Lus10008495 [exp] 210 / 1e-55 AT1G63490 916 / 0.0 transcription factor jumonji (jmjC) domain-containing protein (.1) Lus10037989 [exp] 206 / 1e-54 AT5G04240 988 / 0.0 EARLY FLOWERING 6, Zinc finger (C2H2 type) family protein / transcription factor jumonji (jmj) family protein (.1) Lus10043332 [exp] 204 / 6e-54 AT3G48430 877 / 0.0 Jumonji domain-containing protein 12, relative of early flowering 6 (.1) Lus10009218 [exp] 202 / 3e-53 AT5G04240 993 / 0.0 EARLY FLOWERING 6, Zinc finger (C2H2 type) family protein / transcription factor jumonji (jmj) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [poplar] [flax] Cupin PF02373 [poplar] [flax] JmjC JmjC domain, hydroxylase CL0029 [poplar] [flax] Cupin PF02375 [poplar] [flax] JmjN jmjN domain CL0029 [poplar] [flax] PF02928 [poplar] [flax] zf-C5HC2 C5HC2 zinc finger
Representative CDS sequence Show only first row Show all	>Potri.001G137700.1 pacid=42789753 polypeptide=Potri.001G137700.1.p locus=Potri.001G137700 ID=Potri.001G137700.1.v4.1 annot-version=v4.1 ATGGTGGAAGGAAGGGTATGCTTGTCCAGAGAAGCTAGAAATGGGCTAGAATACTTGAAGCATAGAAGGCTTCAGCGAATGAAATCAGAAAGTGTCACAG AAACTGTAAGTGTTCCCAATATGATGAGTAGAAGCAGAGGAGATAATTTAAGGGCTTCAGCATCATGTGGTGTTAGGGTACCTGGTAATGCAGAATCATT ATCTCGGTCTGCTGGTGCTTCAGGTGGGAAGGATGTGTTTTCAAAGCCAAAGATGGATAAGTTTGACATGAGTAATTTAGAATGGACTGAGAAAATTCCT GAATGCCCTGTCTATTGTCCGACAAAGGAGGAGTTTGAGGATCCCTTGGTGTATTTGCAGAAAATAGCTCCAGAAGCTTCAAGATATGGTATATGCAAGA TTATTTCTCCTGTGAGTGCAACAGTTCCTGCAGGGATTGTATTAATGAGAGAGAAAGCAGGATTCAAGTTTACAACTAGAGTACAACCTCTTCGTCTTGC TGAGTGGAATACTGACGATCGAGTCACCTTTTTTATGAGTGGAAGAAATTATACATTTCGTGATTTCGAGAAAATGGCGAACAAGGTTTTTGCCCGTAGA TATTGTAGTGCCAGTTGTCTTCCTGCAACATACTTGGAAAAAGAATTTTGGCATGAAATTGCTTGTGGAAAGACAGAAACAGTTGAATATGCATGCAATG TCGATGGTAGTGCCTTTTCATCATCTCCCAGTGACCCGCTTGGAAATAGCAAGTGGAATTTGAAGAATCTTTCCCGGCTGCCGAAGTCCATTTTGCGCCT TCTGGGAACAGTTATTCCGGGGGTAACCGATCCTATGCTTTACATTGGAATGCTGTTTAGTGTGTTTGCTTGGCATGTAGAAGATCATTATTTGTATAGC ATCAACTACCATCATTGTGGAGCGTCAAAAACTTGGTATGGAATTCCGGGTCATGCTGCTTTAAAATTTGAAAAAGTGGTCAGAGAACATGTGTATAGCC ATGATATTCTATCCACTGATGGGGAGGATGGAGCTTTTGATGTACTTTTGGGGAAAACAACTCTGTTTCCTCCGAATATATTGTTAGAACATGACATCCC AGTTTACAAGGCTGTGCAAAAGCCCGGGGAGTTTATAATCACTTTCCCTAAAGCTTATCATGCGGGATTCAGCCATGGTTTCAACTGTGGTGAGGCTGTG AACTTTGCAGTTGGTGATTGGTTTCCTTTGGGGGCTTTAGCGAGCCAGCGCTATGCACTACTCAACAAAGTTCCTCTACTTCCTCATGAAGAACTTTTGT GCAAAGAAGCAATGCTTCTTTATACAAGTCTGGAACTTGAAGATTCAGATTATTCCTCTGCAGACTTGGTTTCCCATAATTGGATTAAGGTGTCTTTCGT GAAACTGATGCGATTCCACCATTTTGCTCGCTGCTCTGTAATGAAATTGAGAGCACGCACTGGCATTTTGCCAAATATGAATGGGACAATCTTATGCACC TTATGTAAACGAGATTGCTATGTGGCATTCCTTAACTGCAGCTGTGACTTGCATCCTGTGTGCCTTCGACATGATTTCTCTTCACTTGACTTCTCATGTG GGAGAAATTACACACTGTTTTTGAGGGATGATATTTCCAACATGGAAGCTGCAGCCAAGAAGTTTGAGAAGGAAAATGGCATATTAGAGGAGATTAGACG GCAAGCAAACATTGGTGATGATTTGTACTCTTATCCATTAACCATTAAGTTTCATAGTGTTCCTGAGGATGGGTACACTCCTTATTGCGGTAAAAGCTTT GATTTTAATTCTGAAGCTCCTGTGATAAGTCGGGAATGTTTGCAAGAGTTTAGAGAATCCAAAAACAAATATGGCACTGAAAATTTTAGACCTGAATACT CAGAAGCGTCCGTTTCTTGTGCTGCATCTACTCTGTGTTCTCTGGGAGAGCCAGTTGAAAGCTTTTCTACATCTGACAATGGAAAGGTGCAGGCTGATTC CAATGCAGGGAAACTTGATTCTAAAAGGTTATTTGAGGAAGGATTGCACCGCAAACATGGGTCCTCGGTATCCTCTCTATCACATGATGAATTCCTGAGA ACCCAGCAAAGTAATATTTGTGGGTTAGAGGCTAAACCCAGTGTTGATGAACAAAGTGATGATTCTGACTCGGAGATATTTAGGGTTAAGCGCCGGTCTT CTCTGAAAGTGGAAAAAAGAGTTGTGAATGATGCTTCATCTTCAAAGAATTATGAACACCAGGGGCTTAAAAGACTGAAGAAACTCCAACCTGAAGGAAG ATATGGGCAAACAACTTCATCTGAATGCTGCAGAACTGACGAATCAAATCGCAGTTCTACTTCAGGTTCAGATTATAAAGAAGCACCAGAGAGTGCTTCA AAGGACAGGTTTGCCAGGGGAAGTATTATTCCAATCTCGATCAAGTTCAAGAAGTTGATCAATGAGGAAGCAATGAGTAGACAGCGAGAACAACACAGAA GGGACAGGTTCCAGGATGAATTGGGAAAGACTATGAGGAAACCCCCCCCTATAGAGATTGGACCAAAGCGTCTTAAAGTCAGAAGCCCATCATTTCTAGG TTCAGAGAGCAGGTTAGATTGA
AA sequence Show only first row Show all	>Potri.001G137700.1 pacid=42789753 polypeptide=Potri.001G137700.1.p locus=Potri.001G137700 ID=Potri.001G137700.1.v4.1 annot-version=v4.1 MVEGRVCLSREARNGLEYLKHRRLQRMKSESVTETVSVPNMMSRSRGDNLRASASCGVRVPGNAESLSRSAGASGGKDVFSKPKMDKFDMSNLEWTEKIP ECPVYCPTKEEFEDPLVYLQKIAPEASRYGICKIISPVSATVPAGIVLMREKAGFKFTTRVQPLRLAEWNTDDRVTFFMSGRNYTFRDFEKMANKVFARR YCSASCLPATYLEKEFWHEIACGKTETVEYACNVDGSAFSSSPSDPLGNSKWNLKNLSRLPKSILRLLGTVIPGVTDPMLYIGMLFSVFAWHVEDHYLYS INYHHCGASKTWYGIPGHAALKFEKVVREHVYSHDILSTDGEDGAFDVLLGKTTLFPPNILLEHDIPVYKAVQKPGEFIITFPKAYHAGFSHGFNCGEAV NFAVGDWFPLGALASQRYALLNKVPLLPHEELLCKEAMLLYTSLELEDSDYSSADLVSHNWIKVSFVKLMRFHHFARCSVMKLRARTGILPNMNGTILCT LCKRDCYVAFLNCSCDLHPVCLRHDFSSLDFSCGRNYTLFLRDDISNMEAAAKKFEKENGILEEIRRQANIGDDLYSYPLTIKFHSVPEDGYTPYCGKSF DFNSEAPVISRECLQEFRESKNKYGTENFRPEYSEASVSCAASTLCSLGEPVESFSTSDNGKVQADSNAGKLDSKRLFEEGLHRKHGSSVSSLSHDEFLR TQQSNICGLEAKPSVDEQSDDSDSEIFRVKRRSSLKVEKRVVNDASSSKNYEHQGLKRLKKLQPEGRYGQTTSSECCRTDESNRSSTSGSDYKEAPESAS KDRFARGSIIPISIKFKKLINEEAMSRQREQHRRDRFQDELGKTMRKPPPIEIGPKRLKVRSPSFLGSESRLD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G46910			Transcription factor jumonji (...		Potri.001G137700 [exp]	0	1
AT1G10290		DRP2A, ADL6	DYNAMIN-RELATED PROTEIN 2A, dy...		Potri.003G001400 [exp]	3.31	0.9201	Pt-DH1.2
AT1G61850			phospholipases;galactolipases ...		Potri.004G018700 [exp]	4.47	0.8995
AT1G30450		HAP5, ATCCC1, C...	HAPLESS 5, cation-chloride co-...		Potri.011G090900 [exp]	8.24	0.9154
AT1G30450		HAP5, ATCCC1, C...	HAPLESS 5, cation-chloride co-...		Potri.001G357600 [exp]	12.24	0.8947
AT4G32880	HD	ATHB8, ATHB-8	homeobox gene 8 (.1)		Potri.006G237500 [exp]	12.32	0.8617	Pt-HB1.6
AT5G47730			Sec14p-like phosphatidylinosit...		Potri.006G004000 [exp]	12.72	0.9084	Pt-SSH1.2
AT5G35570			O-fucosyltransferase family pr...		Potri.006G142400 [exp]	19.59	0.8800
AT2G34710	HD	ATHB14, PHB-1D,...	PHABULOSA 1D, PHABULOSA, ARABI...		Potri.001G372300 [exp]	21.63	0.8681	PHB.2
AT1G21170		SEC5B	Exocyst complex component SEC5...		Potri.002G068900 [exp]	26.15	0.8774	Pt-SEC5.2
AT4G16340		SPK1	SPIKE1, guanyl-nucleotide exch...		Potri.011G024000 [exp]	26.70	0.8697	Pt-SPIKE1.3

Compare expression of checked genes

Potri.001G137700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.