Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G46880 840 / 0 HD HDG5, HB-7 HOMEODOMAIN GLABROUS 5, homeobox-7 (.1) AT4G04890 601 / 0 HD PDF2 protodermal factor 2 (.1) AT4G17710 600 / 0 HD HDG4 homeodomain GLABROUS 4 (.1) AT4G21750 577 / 0 HD ATML1 MERISTEM LAYER 1, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2) AT1G05230 567 / 0 HD HDG2 homeodomain GLABROUS 2 (.1.2.3.4) AT1G73360 562 / 0 HD ATHDG11, HDG11, EDT1 ENHANCED DROUGHT TOLERANCE 1, homeodomain GLABROUS 11 (.1) AT1G17920 519 / 1e-174 HD HDG12 homeodomain GLABROUS 12 (.1) AT3G61150 516 / 5e-172 HD HD-GL2-1, HDG1 HOMEODOMAIN-GLABRA2 1, homeodomain GLABROUS 1 (.1) AT4G00730 513 / 5e-171 HD AHDP, ANL2 ANTHOCYANINLESS 2, ARABIDOPSIS THALIANA HOMEODOMAIN PROTEIN, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2) AT5G52170 430 / 3e-140 HD HDG7 homeodomain GLABROUS 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G096000 [exp] 1326 / 0 AT5G46880 873 / 0.0 HOMEODOMAIN GLABROUS 5, homeobox-7 (.1) Potri.015G034100 [exp] 630 / 0 AT1G73360 927 / 0.0 ENHANCED DROUGHT TOLERANCE 1, homeodomain GLABROUS 11 (.1) Potri.012G038500 [exp] 614 / 0 AT1G73360 920 / 0.0 ENHANCED DROUGHT TOLERANCE 1, homeodomain GLABROUS 11 (.1) Potri.004G020400 [exp] 600 / 0 AT4G04890 1185 / 0.0 protodermal factor 2 (.1) Potri.002G230200 [exp] 593 / 0 AT1G05230 1159 / 0.0 homeodomain GLABROUS 2 (.1.2.3.4) Potri.011G025000 [exp] 592 / 0 AT4G21750 1164 / 0.0 MERISTEM LAYER 1, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2) Potri.014G152000 [exp] 587 / 0 AT1G05230 1179 / 0.0 homeodomain GLABROUS 2 (.1.2.3.4) Potri.014G075200 [exp] 571 / 0 AT4G00730 1045 / 0.0 ANTHOCYANINLESS 2, ARABIDOPSIS THALIANA HOMEODOMAIN PROTEIN, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2) Potri.002G154700 [exp] 553 / 0 AT4G00730 1057 / 0.0 ANTHOCYANINLESS 2, ARABIDOPSIS THALIANA HOMEODOMAIN PROTEIN, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031321 [exp] 658 / 0 AT1G73360 920 / 0.0 ENHANCED DROUGHT TOLERANCE 1, homeodomain GLABROUS 11 (.1) Lus10006765 [exp] 593 / 0 AT4G21750 1152 / 0.0 MERISTEM LAYER 1, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2) Lus10007650 [exp] 590 / 0 AT4G04890 1121 / 0.0 protodermal factor 2 (.1) Lus10020059 [exp] 587 / 0 AT4G21750 1130 / 0.0 MERISTEM LAYER 1, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2) Lus10039667 [exp] 580 / 0 AT1G05230 1142 / 0.0 homeodomain GLABROUS 2 (.1.2.3.4) Lus10027175 [exp] 579 / 0 AT1G05230 1138 / 0.0 homeodomain GLABROUS 2 (.1.2.3.4) Lus10031892 [exp] 486 / 7e-163 AT1G73360 618 / 0.0 ENHANCED DROUGHT TOLERANCE 1, homeodomain GLABROUS 11 (.1) Lus10036567 [exp] 486 / 2e-160 AT4G00730 979 / 0.0 ANTHOCYANINLESS 2, ARABIDOPSIS THALIANA HOMEODOMAIN PROTEIN, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2) Lus10027437 [exp] 467 / 1e-153 AT3G61150 715 / 0.0 HOMEODOMAIN-GLABRA2 1, homeodomain GLABROUS 1 (.1) Lus10018359 [exp] 445 / 9e-149 AT4G04890 805 / 0.0 protodermal factor 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0209 [poplar] [flax] Bet_v_1_like PF01852 [poplar] [flax] START START domain
Representative CDS sequence Show only first row Show all	>Potri.001G137800.3 pacid=42788664 polypeptide=Potri.001G137800.3.p locus=Potri.001G137800 ID=Potri.001G137800.3.v4.1 annot-version=v4.1 ATGTTTGGTGATCGCCAAGTTATGTCAAACATGGGAGGGAATGTAGTCTCCTCCGATACCATCTATTCGTTGCCGATCGAAAACCCTAGCTTCAACTTCA TGTCAAGCATGCCTTTCCACACTCTCTCCCCCATTATCTCTAAAGAAGGAAACGGGCTAGTTATGCCAGGTAAGGAGGAAGTGGAAAGTGGGTCTGGCTG TGAACAACTTGAAGAGAAGTCAGGGAATGAGGAAGAGAGCAGCGAGCAACCTCCAAAGAAGAAACGTTACCACAGGCACACTGCACGCCAGATCCAAGAA ATGGAAGCCATGTTTAAGGAATGCCCACACCCAGATGACAAACAAAGAATGAGACTCAGCCATGAACTTGGTCTAAAACCACGCCAAGTCAAGTTTTGGT TCCAAAACCGCCGTACCCAAATGAAGGCACAACAAGACCGATCGGATAATAATATACTCAGGGCAGAAAATGAGAGCTTGCAGAATGATAATTACAGGCT ACAAGCGGAGTTACGAAATCTTATTTGTCCCGATTGTGGAGGTCAAGCCATGCTTGGAGAAATTCCCTTTGAGGATCTTCGACTTGAACATGCAAGACTT AGAGAAGAGTTGGAGCGCGTTTGTTGTATTGCTTCAAGATATGGCGGCCGGCCAATCCACTCAATGGTACCGGCTCCTGCTTTTGTTCCCCCTTCCTTGG ATTTGGATATGAGCATATATTCAAGGCCGTTTCCGGAGTCTTTGGGCACTTGCATTGATATGATGCCTATGCCTATGTTGCCAGAACCATCTTCCTTTCC TGAGGCTGGTATAGTATTAATGGAGGAGGGAGAAGGTCTTGCAATGGGGCTTGCATTGTCGTCCATGGATGAACTTGTGAAGATGTGTAATGCAAATGAG CCTCTTTGGATCACAAACAATGAGAATGGAAAGGAAGTGCTTAATCTTGAAGAGCATGCGAGAATGTTTCCATGGCCTTCCAATCTCAAACAGAACTCTA GTGACATGAGGACTGAAGCTACTCGTGATTGTGCTGTGGTTATAATGAATAGCATTAACTTGGTTGATGCTTTCCTGGATGCTAATAAATGGATGGAGCT GTTTCCCTCCATTGTTGCTAGAGCAAAAACTGTTCAAGTTATAAAAACAGGCGTTTGCGGTGCAAGCGGTTCCCTTCACCTGATGTATGCAGAATTGCAA GTTCTTTCCCCATTGGTGCCAACTCGAGAAACACATTTTCTTCGCTTTTGCCAACAAAATGTAGAGGAGGGCACTTGGGCTATTGTCGATTTTCCCCTCG ATAGCTTCCACGACAACATCCGACCTTCCTTTCCCCTGTACAGGAGACGTCCGTCCGGCTGTGTAATTCAAGACTTGCCCAATGGGTACTCAAAGTTGAC ATGGATAGAACATGCAGAGATAGAGGATAAGCCTGTCCATCAGATATTTAGCCAGTATATCTATAGTGGGATGGCATTTGGAGCACATCGCTGGTTAGCA GTCTTACAGAGACAATGCGAGAGAGTTGCAAGCCTCATGGCTAGAAATATCTCTGACCTAGGAGTAATACCCTCTCCTGAAGCACGGAAGAACATGATGA GACTGGCTCAAAGAATGATCAGAACTTTTAGCCTGAATATCAGCACTTCTAGTGGCCAATCATGGACAGCTTTACCCGATTCCCATGATGGCACTGTTAG AATTATCTCAAGGGAAATCACGGAGCCTGGCCAGCCTAATGGGGTCATTCTCTCTGCAGTATCCACAACTTGGCTGCCCTATCCTCACTTCCTAGTCTTT GATCTGTTGAGGGATGAACATCGCAGATCTCAGCTGGAAGTTCTTTCCAATGGGAATGCCTTGCATGAGGTTGCTCACATTGCCAACGGCTCTCATCCAG GAAACTGCATCTCTCTTCTTCGCATCAACGTCGCCAGCAACTCATCACAGCATGTAGATCTCATGCTACAAGAGAGTTGCACTGATCAATCAGGCAGCCT TGTCGTGTTCACCACCGTGGACGTTGAGTCAATTCAGCTGGCAATGAGCGGCGAGGATCCATCATGCATTCCTCTACTTCCACTAGGTTTTGTCATAGTC CCAGTAGAATCCAGCAGTAGCACTGTCAGTGAAGGCAATTCAATGCAATCTAATTCTGAGGATGGAAATGGAAATGGACATAACAACTCAGGCTGCCTAC TGACTGTGGGTCTCCAAGCCCTTGCAAGCACTATTCCATCTGCAAAGCTCAATTTCTCCAGTGTCACTGCGATAAACAACCATTTGTGCAACACAGTGAA CCAAATCACTGTTGCTCTTAGCAACAACACCACCACCACTAGCAGCTGCCTTGATAACAGCAATGCTGTAGGGTCTTGCAATGAGCCTACAGCTGCACCC AAACAACAAGTTTAG
AA sequence Show only first row Show all	>Potri.001G137800.3 pacid=42788664 polypeptide=Potri.001G137800.3.p locus=Potri.001G137800 ID=Potri.001G137800.3.v4.1 annot-version=v4.1 MFGDRQVMSNMGGNVVSSDTIYSLPIENPSFNFMSSMPFHTLSPIISKEGNGLVMPGKEEVESGSGCEQLEEKSGNEEESSEQPPKKKRYHRHTARQIQE MEAMFKECPHPDDKQRMRLSHELGLKPRQVKFWFQNRRTQMKAQQDRSDNNILRAENESLQNDNYRLQAELRNLICPDCGGQAMLGEIPFEDLRLEHARL REELERVCCIASRYGGRPIHSMVPAPAFVPPSLDLDMSIYSRPFPESLGTCIDMMPMPMLPEPSSFPEAGIVLMEEGEGLAMGLALSSMDELVKMCNANE PLWITNNENGKEVLNLEEHARMFPWPSNLKQNSSDMRTEATRDCAVVIMNSINLVDAFLDANKWMELFPSIVARAKTVQVIKTGVCGASGSLHLMYAELQ VLSPLVPTRETHFLRFCQQNVEEGTWAIVDFPLDSFHDNIRPSFPLYRRRPSGCVIQDLPNGYSKLTWIEHAEIEDKPVHQIFSQYIYSGMAFGAHRWLA VLQRQCERVASLMARNISDLGVIPSPEARKNMMRLAQRMIRTFSLNISTSSGQSWTALPDSHDGTVRIISREITEPGQPNGVILSAVSTTWLPYPHFLVF DLLRDEHRRSQLEVLSNGNALHEVAHIANGSHPGNCISLLRINVASNSSQHVDLMLQESCTDQSGSLVVFTTVDVESIQLAMSGEDPSCIPLLPLGFVIV PVESSSSTVSEGNSMQSNSEDGNGNGHNNSGCLLTVGLQALASTIPSAKLNFSSVTAINNHLCNTVNQITVALSNNTTTTSSCLDNSNAVGSCNEPTAAP KQQV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G46880	HD	HDG5, HB-7	HOMEODOMAIN GLABROUS 5, homeob...		Potri.001G137800 [exp]	0	1
AT3G16660			Pollen Ole e 1 allergen and ex...		Potri.010G012400 [exp]	2.00	0.9908
AT5G44120		ATCRA1, CRU1, C...	CRUCIFERINA, RmlC-like cupins ...		Potri.019G004500 [exp]	3.00	0.9912	QLEG.3
AT1G52820			2-oxoglutarate (2OG) and Fe(II...		Potri.006G248000 [exp]	3.74	0.9892
					Potri.018G115601 [exp]	4.00	0.9892
AT3G63095			Tetratricopeptide repeat (TPR)...		Potri.014G139100 [exp]	7.48	0.9783
					Potri.001G284032 [exp]	8.48	0.9856
AT3G28150		AXY4L, TBL22	ALTERED XYLOGLUCAN 4-LIKE, TRI...		Potri.011G144100 [exp]	12.24	0.9847
AT3G16370			GDSL-like Lipase/Acylhydrolase...		Potri.001G191600 [exp]	12.40	0.9815
AT3G21090		ABCG15	ATP-binding cassette G15, ABC-...		Potri.016G056600 [exp]	12.96	0.9850
AT1G73850			Protein of unknown function (D...		Potri.015G046900 [exp]	14.49	0.9779

Compare expression of checked genes

Potri.001G137800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.