Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G35490 301 / 3e-100 Plastid-lipid associated protein PAP / fibrillin family protein (.1) AT4G22240 208 / 7e-65 Plastid-lipid associated protein PAP / fibrillin family protein (.1) AT4G04020 201 / 9e-62 FIB fibrillin (.1) AT3G26070 44 / 0.0001 Plastid-lipid associated protein PAP / fibrillin family protein (.1) AT3G26080 41 / 0.0005 plastid-lipid associated protein PAP / fibrillin family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G095900 [exp] 405 / 3e-141 AT2G35490 334 / 5e-113 Plastid-lipid associated protein PAP / fibrillin family protein (.1) Potri.004G003200 [exp] 213 / 2e-66 AT4G22240 380 / 1e-132 Plastid-lipid associated protein PAP / fibrillin family protein (.1) Potri.001G209600 [exp] 46 / 1e-05 AT3G26070 253 / 7e-85 Plastid-lipid associated protein PAP / fibrillin family protein (.1) Potri.003G020700 [exp] 42 / 0.0005 AT3G26070 244 / 6e-81 Plastid-lipid associated protein PAP / fibrillin family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035384 [exp] 304 / 2e-101 AT2G35490 357 / 5e-122 Plastid-lipid associated protein PAP / fibrillin family protein (.1) Lus10030987 [exp] 302 / 8e-101 AT2G35490 354 / 5e-121 Plastid-lipid associated protein PAP / fibrillin family protein (.1) Lus10001099 [exp] 205 / 3e-63 AT4G22240 362 / 5e-126 Plastid-lipid associated protein PAP / fibrillin family protein (.1) Lus10014790 [exp] 199 / 8e-61 AT4G22240 363 / 2e-126 Plastid-lipid associated protein PAP / fibrillin family protein (.1) Lus10020982 [exp] 41 / 0.0008 AT3G26070 265 / 1e-89 Plastid-lipid associated protein PAP / fibrillin family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04755 [poplar] [flax] PAP_fibrillin PAP_fibrillin
Representative CDS sequence Show only first row Show all	>Potri.001G137900.1 pacid=42789368 polypeptide=Potri.001G137900.1.p locus=Potri.001G137900 ID=Potri.001G137900.1.v4.1 annot-version=v4.1 ATGGCACTCTTCTTCACCTCACACTCCTCCCTCTTCCTCTCCCCTTCGTCTTCCATAAACCCCAACAACCCATTCCCTCTCTCCAAATCCCCACAACTAC CATCCCTATCTTTCTCCTGCAAATCCTCTAAAACTCTCCGTTTCCATCCCCAAATTACTAAACAACCCAGATTCCCTACCCACCTCACACGCACCTCCTC CTCTGTTCCGTCATCTGACCCGGATCCGGAACCAAACCCAACTCCAGTAAGTATCACTGACGAGTGGGGCGAGAAGGCAGAGCCCGAGCCCGAGTACCCG AAAGATGCGGACTCGGATCCTACGAGAAATGATGACGAGTGGGGGGAGCAATTTGTTGCCGCGGGAAATGGCACCGCAGCGGCACCGAGTACCAGCAGTG CGGTGGTCGTGGAGAAGGATGGGAGGATTGAGGATTTGAAGAGGTGTTTGGTAGATACGGTCTACGGAACGGAATTTGGGTTTCGGGCCACCCCGGAGAT CCGGGCTGAAGTTTTAGAGCTGGTTAATCAGTTGGAGGCTGTAAACCCGACTTCGGCACCTGTGGATACTACTGGTGTGCTCGATGGAAAATGGGTCTTG GTGTATACTGCATTTTCTGAACTGTTGCCACTTCTGGCAGCAGGTGCTACACCTTTATTGAAAGTGAAAAGCATATCTCAAACAATTGATTCCAGCAATC TATCTATTGTGAACTCAACTACATTGTCAAGCCCTTTTGCTACTTTCTCTTTTAGCGCATCTGCAACTTTTGAGGTTCGGACTCCTTCAAGAATACAGGT TGAATTTAAGGAAGGTACACTGCAACCTCCGGAAATAAATTCCAACATAGATCTCCCAGAAAATGTTGAACTATTTGGGCAAAAGATCAATTTGTCTCCT GTCCAGCAATCTCTCAATCCTCTGCAGGAGGCAGCAGCAAATATTGGAAGAACCATTTCTGGCCAGCCACCACTTAAGGTACCCATTCCAGGCAAACAAG CAAGCTCCTGGCTTCTTATTACCTACCTTGATGAGGATCTCCGTATCTCAAGAGGGGATGGTGGTCTTTTTGTTCTTGCTAAAGAAGGAAGTCCTCTTCT AGAACTGTAG
AA sequence Show only first row Show all	>Potri.001G137900.1 pacid=42789368 polypeptide=Potri.001G137900.1.p locus=Potri.001G137900 ID=Potri.001G137900.1.v4.1 annot-version=v4.1 MALFFTSHSSLFLSPSSSINPNNPFPLSKSPQLPSLSFSCKSSKTLRFHPQITKQPRFPTHLTRTSSSVPSSDPDPEPNPTPVSITDEWGEKAEPEPEYP KDADSDPTRNDDEWGEQFVAAGNGTAAAPSTSSAVVVEKDGRIEDLKRCLVDTVYGTEFGFRATPEIRAEVLELVNQLEAVNPTSAPVDTTGVLDGKWVL VYTAFSELLPLLAAGATPLLKVKSISQTIDSSNLSIVNSTTLSSPFATFSFSASATFEVRTPSRIQVEFKEGTLQPPEINSNIDLPENVELFGQKINLSP VQQSLNPLQEAAANIGRTISGQPPLKVPIPGKQASSWLLITYLDEDLRISRGDGGLFVLAKEGSPLLEL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G35490			Plastid-lipid associated prote...		Potri.001G137900 [exp]	0	1
AT2G36000		EMB3114	EMBRYO DEFECTIVE 3114, Mitocho...		Potri.016G072200 [exp]	1.00	0.9902
AT3G08740			elongation factor P (EF-P) fam...		Potri.016G136600 [exp]	1.41	0.9882
AT5G57345			unknown protein		Potri.006G165800 [exp]	3.00	0.9843
AT3G20680			Domain of unknown function (DU...		Potri.011G132500 [exp]	3.16	0.9832
AT3G58830			haloacid dehalogenase (HAD) su...		Potri.002G060600 [exp]	5.29	0.9825
AT1G74970		TWN3, RPS9	ribosomal protein S9 (.1)		Potri.002G132200 [exp]	5.65	0.9839	Pt-RPS9.2
AT1G68590			Ribosomal protein PSRP-3/Ycf65...		Potri.010G127300 [exp]	6.32	0.9804
AT3G54210			Ribosomal protein L17 family p...		Potri.006G113500 [exp]	7.74	0.9831
AT5G65840			Thioredoxin superfamily protei...		Potri.014G012100 [exp]	7.93	0.9795
AT4G27990		ATYLMG1-2	YGGT family protein (.1)		Potri.002G250200 [exp]	8.66	0.9762

Compare expression of checked genes

Potri.001G137900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.